Difference between revisions of "RXN-11334"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCIT-CLEAV-RXN ISOCIT-CLEAV-RXN] == * direction: ** REVERSIBLE * common name: ** isocitrate_lyase...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11334 RXN-11334] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/1.1...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCIT-CLEAV-RXN ISOCIT-CLEAV-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11334 RXN-11334] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** isocitrate_lyase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.3.1 EC-4.1.3.1]
+
** [http://enzyme.expasy.org/EC/1.1.99.35 EC-1.1.99.35]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[GLYOX]][c] '''+''' 1 [[SUC]][c]
+
** 1 [[Glucopyranose]][c] '''+''' 1 [[Acceptor]][c] '''<=>''' 1 [[Donor-H2]][c] '''+''' 1 [[GLC-D-LACTONE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 D-threo-isocitrate[c] '''<=>''' 1 glyoxylate[c] '''+''' 1 succinate[c]
+
** 1 D-glucopyranose[c] '''+''' 1 an oxidized electron acceptor[c] '''<=>''' 1 a reduced electron acceptor[c] '''+''' 1 D-glucono-1,5-lactone[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14008]]
+
* Gene: [[Tiso_gene_3229]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***AUTOMATED-NAME-MATCH
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13245 13245]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24540 24540]
−
* PIR:
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41338 A41338]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40713 I40713]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JA0155 JA0155]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC6182 JC6182]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26857 S26857]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26858 S26858]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39953 S39953]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52819 S52819]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S77654 S77654]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04115 T04115]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06353 T06353]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07631 T07631]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07632 T07632]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08046 T08046]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09774 T09774]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09779 T09779]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11209 T11209]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZBYI WZBYI]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCKI WZCKI]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCNIU WZCNIU]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCSI WZCSI]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZECIC WZECIC]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZRPI WZRPI]
+
−
* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R00479 R00479]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P28467 P28467]
+
−
** [http://www.uniprot.org/uniprot/P42449 P42449]
+
−
** [http://www.uniprot.org/uniprot/P20699 P20699]
+
−
** [http://www.uniprot.org/uniprot/O13439 O13439]
+
−
** [http://www.uniprot.org/uniprot/P28299 P28299]
+
−
** [http://www.uniprot.org/uniprot/Q12031 Q12031]
+
−
** [http://www.uniprot.org/uniprot/P46831 P46831]
+
−
** [http://www.uniprot.org/uniprot/O24588 O24588]
+
−
** [http://www.uniprot.org/uniprot/P49297 P49297]
+
−
** [http://www.uniprot.org/uniprot/P45456 P45456]
+
−
** [http://www.uniprot.org/uniprot/P45457 P45457]
+
−
** [http://www.uniprot.org/uniprot/Q39577 Q39577]
+
−
** [http://www.uniprot.org/uniprot/Q41084 Q41084]
+
−
** [http://www.uniprot.org/uniprot/Q43097 Q43097]
+
−
** [http://www.uniprot.org/uniprot/P28240 P28240]
+
−
** [http://www.uniprot.org/uniprot/P20014 P20014]
+
−
** [http://www.uniprot.org/uniprot/P17069 P17069]
+
−
** [http://www.uniprot.org/uniprot/P15479 P15479]
+
−
** [http://www.uniprot.org/uniprot/P0A9G6 P0A9G6]
+
−
** [http://www.uniprot.org/uniprot/P25248 P25248]
+
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=isocitrate_lyase}}
+
{{#set: ec number=EC-1.1.99.35}}
−
{{#set: ec number=EC-4.1.3.1}}
+
{{#set: gene associated=Tiso_gene_3229}}
−
{{#set: gene associated=Tiso_gene_14008}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=P105-PWY|GLYOXYLATE-BYPASS|PWY-6969}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction source=orthology-esiliculosus}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:03, 21 March 2018

Reaction RXN-11334

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-glucopyranose[c] + 1 an oxidized electron acceptor[c] <=> 1 a reduced electron acceptor[c] + 1 D-glucono-1,5-lactone[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11334&oldid=45614"