Difference between revisions of "RXN0-5224"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ILE ILE] == * smiles: ** CCC(C)C([N+])C(=O)[O-] * inchi key: ** InChIKey=AGPKZVBTJJNPAG-WHFBIAK...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5224 RXN0-5224] == * direction: ** REVERSIBLE * common name: ** carbonic_anhydrase ** gamma_ca...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ILE ILE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5224 RXN0-5224] ==
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* smiles:
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* direction:
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** CCC(C)C([N+])C(=O)[O-]
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** REVERSIBLE
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* inchi key:
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** InChIKey=AGPKZVBTJJNPAG-WHFBIAKZSA-N
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* common name:
 
* common name:
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** L-isoleucine
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** carbonic_anhydrase
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* molecular weight:
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** gamma_carbonic_anhydrase
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** 131.174   
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** ORF
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** beta-type_carbonic_anhydrase
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** alpha_ca
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* ec number:
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** [http://enzyme.expasy.org/EC/4.2.1.1 EC-4.2.1.1]
 
* Synonym(s):
 
* Synonym(s):
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** I
 
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** ile
 
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** iso-leucine
 
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** L-ile
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[ISOLEUCINE--TRNA-LIGASE-RXN]]
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* With identifiers:
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* [[RME144]]
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** 1 [[PROTON]][c] '''+''' 1 [[HCO3]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[WATER]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 H+[c] '''+''' 1 hydrogencarbonate[c] '''<=>''' 1 CO2[c] '''+''' 1 H2O[c]
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* [[BRANCHED-CHAINAMINOTRANSFERILEU-RXN]]
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 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_18927]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_6150]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_1600]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_3056]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_9852]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17511]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_19413]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_20230]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_19414]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_7660]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-241 PWY-241]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWYQT-4429]], CO2 fixation into oxaloacetate (anaplerotic): [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4429 PWYQT-4429]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
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** '''8''' reactions found over '''14''' reactions in the full pathway
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* [[CYANCAT-PWY]], cyanate degradation: [http://metacyc.org/META/NEW-IMAGE?object=CYANCAT-PWY CYANCAT-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 73-32-5
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* RHEA:
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* METABOLIGHTS : MTBLC58045
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10748 10748]
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* PUBCHEM:
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{{#set: direction=REVERSIBLE}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=7043901 7043901]
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{{#set: common name=carbonic_anhydrase}}
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* HMDB : HMDB00172
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{{#set: common name=gamma_carbonic_anhydrase}}
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* LIGAND-CPD:
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{{#set: common name=ORF}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00407 C00407]
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{{#set: common name=beta-type_carbonic_anhydrase}}
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* CHEBI:
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{{#set: common name=alpha_ca}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58045 58045]
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{{#set: ec number=EC-4.2.1.1}}
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* BIGG : ile__L
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{{#set: gene associated=Tiso_gene_18927|Tiso_gene_6150|Tiso_gene_1600|Tiso_gene_3056|Tiso_gene_9852|Tiso_gene_17511|Tiso_gene_19413|Tiso_gene_20230|Tiso_gene_19414|Tiso_gene_7660}}
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{{#set: smiles=CCC(C)C([N+])C(=O)[O-]}}
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{{#set: in pathway=PWY-241|PWYQT-4429|PWY-7117|PWY-7115|PWY-6142|CYANCAT-PWY}}
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{{#set: inchi key=InChIKey=AGPKZVBTJJNPAG-WHFBIAKZSA-N}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: common name=L-isoleucine}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: molecular weight=131.174    }}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: common name=I|ile|iso-leucine|L-ile}}
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{{#set: consumed by=ISOLEUCINE--TRNA-LIGASE-RXN|RME144}}
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{{#set: consumed or produced by=BRANCHED-CHAINAMINOTRANSFERILEU-RXN}}
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Latest revision as of 20:04, 21 March 2018

Reaction RXN0-5224

  • direction:
    • REVERSIBLE
  • common name:
    • carbonic_anhydrase
    • gamma_carbonic_anhydrase
    • ORF
    • beta-type_carbonic_anhydrase
    • alpha_ca
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 hydrogencarbonate[c] <=> 1 CO2[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type: PWY-241
    • 2 reactions found over 5 reactions in the full pathway
  • PWYQT-4429, CO2 fixation into oxaloacetate (anaplerotic): PWYQT-4429
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type: PWY-7117
    • 7 reactions found over 10 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type: PWY-7115
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 8 reactions found over 14 reactions in the full pathway
  • CYANCAT-PWY, cyanate degradation: CYANCAT-PWY
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-5224&oldid=45654"