Difference between revisions of "Tiso gene 9575"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9516 RXN-9516] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-hexanoyl-[acyl-carrier...")
(Created page with "Category:Gene == Gene Tiso_gene_9575 == * right end position: ** 5696 * transcription direction: ** POSITIVE * left end position: ** 3973 * centisome position: ** 43.08643...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9516 RXN-9516] ==
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== Gene Tiso_gene_9575 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5696
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* common name:
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* transcription direction:
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** 3-oxo-hexanoyl-[acyl-carrier protein] synthase
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** POSITIVE
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** 3-oxoacyl-synthase
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* left end position:
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* ec number:
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** 3973
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
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* centisome position:
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** 43.086433   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-15556]]
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** 1 [[Butanoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-hexanoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 a butyryl-[acp][c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 a 3-oxo-hexanoyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 CO2[c]
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* Reaction: [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_19302]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_5939]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_14485]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15991]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7511]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=5696}}
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{{#set: common name=3-oxo-hexanoyl-[acyl-carrier protein] synthase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=3-oxoacyl-synthase}}
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{{#set: left end position=3973}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: centisome position=43.086433    }}
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{{#set: gene associated=Tiso_gene_19302|Tiso_gene_5939|Tiso_gene_14485|Tiso_gene_15991}}
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{{#set: reaction associated=RXN-15556|UBIQUITIN--PROTEIN-LIGASE-RXN}}
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{{#set: in pathway=PWY-5971|PWY-7388}}
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{{#set: pathway associated=PWY-7511}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:04, 21 March 2018

Gene Tiso_gene_9575

  • right end position:
    • 5696
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3973
  • centisome position:
    • 43.086433
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_9575&oldid=45713"