|
|
| Line 1: |
Line 1: |
| | [[Category:Reaction]] | | [[Category:Reaction]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FARNESYLTRANSTRANSFERASE-RXN FARNESYLTRANSTRANSFERASE-RXN] == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5257 RXN0-5257] == |
| | * direction: | | * direction: |
| | ** LEFT-TO-RIGHT | | ** LEFT-TO-RIGHT |
| − | * common name:
| |
| − | ** farnesyltranstransferase
| |
| − | ** geranylgeranyl_pyrophosphate_synthase
| |
| − | * ec number:
| |
| − | ** [http://enzyme.expasy.org/EC/2.5.1.29 EC-2.5.1.29]
| |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| | == Reaction Formula == | | == Reaction Formula == |
| | * With identifiers: | | * With identifiers: |
| − | ** 1 [[FARNESYL-PP]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[GERANYLGERANYL-PP]][c] | + | ** 2 [[PROTON]][c] '''+''' 2 [[E-]][c] '''+''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''=>''' 1 [[GLYCEROL-3P]][c] |
| | * With common name(s): | | * With common name(s): |
| − | ** 1 (2E,6E)-farnesyl diphosphate[c] '''+''' 1 isopentenyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 geranylgeranyl diphosphate[c] | + | ** |
| − | | + | |
| | == Genes associated with this reaction == | | == Genes associated with this reaction == |
| − | Genes have been associated with this reaction based on different elements listed below.
| |
| − | * Gene: [[Tiso_gene_7305]]
| |
| − | ** Source: [[annotation-in-silico_annotation]]
| |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| |
| − | * Gene: [[Tiso_gene_16284]]
| |
| − | ** Source: [[annotation-in-silico_annotation]]
| |
| − | *** Assignment: EC-NUMBER
| |
| − | ** Source: [[annotation-experimental_annotation]]
| |
| − | *** Assignment: EC-NUMBER
| |
| − | ** Source: [[orthology-athaliana]]
| |
| − | ** Source: [[orthology-synechocystis]]
| |
| − | ** Source: [[orthology-esiliculosus]]
| |
| | == Pathways == | | == Pathways == |
| − | * [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
| |
| − | ** '''3''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[PWY-7492]], paspaline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7492 PWY-7492]
| |
| − | ** '''1''' reactions found over '''6''' reactions in the full pathway
| |
| − | * [[PWY-6659]], fusicoccin A biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6659 PWY-6659]
| |
| − | ** '''1''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[PWY-6691]], plaunotol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6691 PWY-6691]
| |
| − | ** '''1''' reactions found over '''3''' reactions in the full pathway
| |
| − | * [[PWY-5120]], geranylgeranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5120 PWY-5120]
| |
| − | ** '''1''' reactions found over '''1''' reactions in the full pathway
| |
| − | * [[PWY-7517]], brassicicene C biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7517 PWY-7517]
| |
| − | ** '''1''' reactions found over '''7''' reactions in the full pathway
| |
| − | * [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721]
| |
| − | ** '''2''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[PWY-7720]], ophiobolin F biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7720 PWY-7720]
| |
| − | ** '''1''' reactions found over '''3''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * Category: [[orthology]]
| |
| − | ** Source: [[orthology-athaliana]]
| |
| − | *** Tool: [[pantograph]]
| |
| − | ** Source: [[orthology-synechocystis]]
| |
| − | *** Tool: [[pantograph]]
| |
| − | ** Source: [[orthology-esiliculosus]]
| |
| − | *** Tool: [[pantograph]]
| |
| − | * Category: [[manual]]
| |
| − | ** Source: [[manual-primary_network]]
| |
| | * Category: [[annotation]] | | * Category: [[annotation]] |
| | ** Source: [[annotation-in-silico_annotation]] | | ** Source: [[annotation-in-silico_annotation]] |
| Line 62: |
Line 19: |
| | *** Tool: [[pathwaytools]] | | *** Tool: [[pathwaytools]] |
| | == External links == | | == External links == |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17653 17653]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02061 R02061]
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/P39464 P39464]
| |
| − | ** [http://www.uniprot.org/uniprot/P24322 P24322]
| |
| − | ** [http://www.uniprot.org/uniprot/P80042 P80042]
| |
| − | ** [http://www.uniprot.org/uniprot/Q12051 Q12051]
| |
| − | ** [http://www.uniprot.org/uniprot/P95999 P95999]
| |
| − | ** [http://www.uniprot.org/uniprot/P48368 P48368]
| |
| − | ** [http://www.uniprot.org/uniprot/P93227 P93227]
| |
| − | ** [http://www.uniprot.org/uniprot/P93228 P93228]
| |
| − | ** [http://www.uniprot.org/uniprot/Q42698 Q42698]
| |
| − | ** [http://www.uniprot.org/uniprot/Q43133 Q43133]
| |
| − | ** [http://www.uniprot.org/uniprot/Q42866 Q42866]
| |
| − | ** [http://www.uniprot.org/uniprot/P54976 P54976]
| |
| | {{#set: direction=LEFT-TO-RIGHT}} | | {{#set: direction=LEFT-TO-RIGHT}} |
| − | {{#set: common name=farnesyltranstransferase}}
| + | {{#set: in pathway=}} |
| − | {{#set: common name=geranylgeranyl_pyrophosphate_synthase}}
| + | {{#set: reconstruction category=annotation}} |
| − | {{#set: ec number=EC-2.5.1.29}}
| + | {{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}} |
| − | {{#set: gene associated=Tiso_gene_7305|Tiso_gene_16284}}
| + | {{#set: reconstruction tool=pathwaytools}} |
| − | {{#set: in pathway=PWY-7736|PWY-7492|PWY-6659|PWY-6691|PWY-5120|PWY-7517|PWY-7721|PWY-7720}} | + | |
| − | {{#set: reconstruction category=orthology|manual|annotation}} | + | |
| − | {{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}} | + | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}} | + | |
