Difference between revisions of "RXN-18207"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN] == * direction: ** LEFT-TO-RIG...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18207 RXN-18207] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18207 RXN-18207] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/3.6.1.67 EC-3.6.1.67]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DIHYDRONEOPTERIN-P3]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[DIHYDRONEOPTERIN-P]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[CPD-19490]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPDQT-28]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 7,8-dihydroneopterin 3'-triphosphate[c] '''+''' 1 H2O[c] '''=>''' 1 diphosphate[c] '''+''' 1 7,8-dihydroneopterin 3'-phosphate[c] '''+''' 1 H+[c]
+
** 1 3-isopropyl-7-(methylthio)-2-oxoheptanoate[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 7-(methylthio)-2-oxoheptanoate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_13784]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_13604]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_16712]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_17804]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_10760]]
 
−
** [[pantograph]]-[[synechocystis]]
 
−
* [[Tiso_gene_17467]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
* [[Tiso_gene_18343]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_4645]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_6767]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_277]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_3314]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_12636]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_43]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_15988]]
 
−
** [[pantograph]]-[[synechocystis]]
 
−
* [[Tiso_gene_6277]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_15582]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_10158]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
* [[Tiso_gene_13847]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_6144]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
* [[Tiso_gene_13729]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
* [[Tiso_gene_8601]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_2747]]
 
−
** [[pantograph]]-[[synechocystis]]
 
−
* [[Tiso_gene_5713]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_12514]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_2924]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_4112]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_1142]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_8599]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_19075]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_14428]]
 
−
** [[pantograph]]-[[synechocystis]]
 
−
* [[Tiso_gene_8600]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_1799]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_10288]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_11387]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
* [[Tiso_gene_2019]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_7067]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_3667]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_16176]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6147 PWY-6147]
+
* [[PWYQT-4450]], aliphatic glucosinolate biosynthesis, side chain elongation cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4450 PWYQT-4450]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''10''' reactions found over '''30''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[synechocystis]]
+
*** Tool: [[pathwaytools]]
−
*** [[esiliculosus]]
+
−
*** [[athaliana]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25302 25302]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R04638 R04638]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-3.6.1.67}}
+
{{#set: in pathway=PWYQT-4450}}
−
{{#set: gene associated=Tiso_gene_13784|Tiso_gene_13604|Tiso_gene_16712|Tiso_gene_17804|Tiso_gene_10760|Tiso_gene_17467|Tiso_gene_18343|Tiso_gene_4645|Tiso_gene_6767|Tiso_gene_277|Tiso_gene_3314|Tiso_gene_12636|Tiso_gene_43|Tiso_gene_15988|Tiso_gene_6277|Tiso_gene_15582|Tiso_gene_10158|Tiso_gene_13847|Tiso_gene_6144|Tiso_gene_13729|Tiso_gene_8601|Tiso_gene_2747|Tiso_gene_5713|Tiso_gene_12514|Tiso_gene_2924|Tiso_gene_4112|Tiso_gene_1142|Tiso_gene_8599|Tiso_gene_19075|Tiso_gene_14428|Tiso_gene_8600|Tiso_gene_1799|Tiso_gene_10288|Tiso_gene_11387|Tiso_gene_2019|Tiso_gene_7067|Tiso_gene_3667|Tiso_gene_16176}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: in pathway=PWY-6147}}
+
{{#set: reconstruction source=annotation-experimental_annotation}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
+

Latest revision as of 21:05, 21 March 2018

Reaction RXN-18207

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-isopropyl-7-(methylthio)-2-oxoheptanoate[c] + 1 H+[c] => 1 CO2[c] + 1 7-(methylthio)-2-oxoheptanoate[c]

Genes associated with this reaction

Pathways

  • PWYQT-4450, aliphatic glucosinolate biosynthesis, side chain elongation cycle: PWYQT-4450
    • 10 reactions found over 30 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-18207&oldid=45809"