Difference between revisions of "RXN-13305"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl_phosphate_s...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13305 RXN-13305] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13305 RXN-13305] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** carbamoyl_phosphate_synthetase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.3.5.5 EC-6.3.5.5]
+
** [http://enzyme.expasy.org/EC/4.2.1.134 EC-4.2.1.134]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLN]][c] '''+''' 2 [[ATP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[HCO3]][c] '''=>''' 2 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 1 [[GLT]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[CPD-14278]][c] '''=>''' 1 [[CPD-14283]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-glutamine[c] '''+''' 2 ATP[c] '''+''' 1 H2O[c] '''+''' 1 hydrogencarbonate[c] '''=>''' 2 ADP[c] '''+''' 1 carbamoyl phosphate[c] '''+''' 1 L-glutamate[c] '''+''' 2 H+[c] '''+''' 1 phosphate[c]
+
** 1 (3R)-3-hydroxy-cerotoyl-CoA[c] '''=>''' 1 trans-cerot-2-enoyl-CoA[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_4976]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_4975]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***AUTOMATED-NAME-MATCH
 
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* [[Tiso_gene_4685]]
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***AUTOMATED-NAME-MATCH
 
−
** [[pantograph]]-[[esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
+
* [[PWY-7036]], very long chain fatty acid biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7036 PWY-7036]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''16''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
+
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
−
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
+
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
+
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00575 R00575]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P08955 P08955]
 
−
** [http://www.uniprot.org/uniprot/P13258 P13258]
 
−
** [http://www.uniprot.org/uniprot/P38099 P38099]
 
−
** [http://www.uniprot.org/uniprot/P27708 P27708]
 
−
** [http://www.uniprot.org/uniprot/Q91437 Q91437]
 
−
** [http://www.uniprot.org/uniprot/O28994 O28994]
 
−
** [http://www.uniprot.org/uniprot/P57689 P57689]
 
−
** [http://www.uniprot.org/uniprot/P38098 P38098]
 
−
** [http://www.uniprot.org/uniprot/Q9WZ27 Q9WZ27]
 
−
** [http://www.uniprot.org/uniprot/Q9PMG8 Q9PMG8]
 
−
** [http://www.uniprot.org/uniprot/Q9JXW8 Q9JXW8]
 
−
** [http://www.uniprot.org/uniprot/Q9JVZ6 Q9JVZ6]
 
−
** [http://www.uniprot.org/uniprot/P25993 P25993]
 
−
** [http://www.uniprot.org/uniprot/Q9PIL7 Q9PIL7]
 
−
** [http://www.uniprot.org/uniprot/P25994 P25994]
 
−
** [http://www.uniprot.org/uniprot/Q9JW02 Q9JW02]
 
−
** [http://www.uniprot.org/uniprot/O25577 O25577]
 
−
** [http://www.uniprot.org/uniprot/P52557 P52557]
 
−
** [http://www.uniprot.org/uniprot/P46537 P46537]
 
−
** [http://www.uniprot.org/uniprot/P18185 P18185]
 
−
** [http://www.uniprot.org/uniprot/P07259 P07259]
 
−
** [http://www.uniprot.org/uniprot/P20054 P20054]
 
−
** [http://www.uniprot.org/uniprot/P05990 P05990]
 
−
** [http://www.uniprot.org/uniprot/P14845 P14845]
 
−
** [http://www.uniprot.org/uniprot/Q06950 Q06950]
 
−
** [http://www.uniprot.org/uniprot/Q92115 Q92115]
 
−
** [http://www.uniprot.org/uniprot/Q09794 Q09794]
 
−
** [http://www.uniprot.org/uniprot/P03965 P03965]
 
−
** [http://www.uniprot.org/uniprot/P07258 P07258]
 
−
** [http://www.uniprot.org/uniprot/P00968 P00968]
 
−
** [http://www.uniprot.org/uniprot/P0A6F1 P0A6F1]
 
−
** [http://www.uniprot.org/uniprot/P93345 P93345]
 
−
** [http://www.uniprot.org/uniprot/Q27732 Q27732]
 
−
** [http://www.uniprot.org/uniprot/Q27448 Q27448]
 
−
** [http://www.uniprot.org/uniprot/O50236 O50236]
 
−
** [http://www.uniprot.org/uniprot/O94313 O94313]
 
−
** [http://www.uniprot.org/uniprot/Q59968 Q59968]
 
−
** [http://www.uniprot.org/uniprot/Q59969 Q59969]
 
−
** [http://www.uniprot.org/uniprot/O50301 O50301]
 
−
** [http://www.uniprot.org/uniprot/O50302 O50302]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=carbamoyl_phosphate_synthetase}}
+
{{#set: ec number=EC-4.2.1.134}}
−
{{#set: ec number=EC-6.3.5.5}}
+
{{#set: in pathway=PWY-7036}}
−
{{#set: gene associated=Tiso_gene_4976|Tiso_gene_4975|Tiso_gene_4685}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: in pathway=ARGSYN-PWY|PWY-5154|PWY-7790|ARGSYNBSUB-PWY|PWY-7400|PWY-7791|PWY-5686}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 21:05, 21 March 2018

Reaction RXN-13305

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (3R)-3-hydroxy-cerotoyl-CoA[c] => 1 trans-cerot-2-enoyl-CoA[c] + 1 H2O[c]

Genes associated with this reaction

Pathways

  • PWY-7036, very long chain fatty acid biosynthesis II: PWY-7036
    • 16 reactions found over 16 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13305&oldid=45900"