Difference between revisions of "CARBPSYN-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-SYNTHASE-NADH-RXN GLUTAMATE-SYNTHASE-NADH-RXN] == * direction: ** LEFT-TO-RIGHT * ec numb...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl_phosphate_s...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-SYNTHASE-NADH-RXN GLUTAMATE-SYNTHASE-NADH-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** carbamoyl_phosphate_synthetase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.4.1.14 EC-1.4.1.14]
+
** [http://enzyme.expasy.org/EC/6.3.5.5 EC-6.3.5.5]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[NADH]][c] '''=>''' 2 [[GLT]][c] '''+''' 1 [[NAD]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[GLN]][c] '''+''' 2 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''=>''' 1 [[CARBAMOYL-P]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[ADP]][c] '''+''' 1 [[GLT]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-oxoglutarate[c] '''+''' 1 H+[c] '''+''' 1 L-glutamine[c] '''+''' 1 NADH[c] '''=>''' 2 L-glutamate[c] '''+''' 1 NAD+[c]
+
** 1 H2O[c] '''+''' 1 L-glutamine[c] '''+''' 2 ATP[c] '''+''' 1 hydrogencarbonate[c] '''=>''' 1 carbamoyl phosphate[c] '''+''' 2 H+[c] '''+''' 1 phosphate[c] '''+''' 2 ADP[c] '''+''' 1 L-glutamate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11511]]
+
* Gene: [[Tiso_gene_4976]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_2581]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
* Gene: [[Tiso_gene_4975]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_1154]]
+
* Gene: [[Tiso_gene_4685]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[GLUGLNSYN-PWY]], L-glutamate biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=GLUGLNSYN-PWY GLUGLNSYN-PWY]
+
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6963]], ammonia assimilation cycle I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6963 PWY-6963]
+
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[creinhardtii]]
+
*** Tool: [[pantograph]]
−
*** [[synechocystis]]
+
* Category: [[manual]]
−
*** [[athaliana]]
+
** Source: [[manual-primary_network]]
−
*** [[esiliculosus]]
+
* Category: [[annotation]]
−
* [[manual]]:
+
** Source: [[annotation-experimental_annotation]]
−
** [[primary_network]]
+
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13753 13753]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00093 R00093]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00575 R00575]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9RXX2 Q9RXX2]
+
** [http://www.uniprot.org/uniprot/P08955 P08955]
−
** [http://www.uniprot.org/uniprot/Q03460 Q03460]
+
** [http://www.uniprot.org/uniprot/P13258 P13258]
−
** [http://www.uniprot.org/uniprot/Q22275 Q22275]
+
** [http://www.uniprot.org/uniprot/P38099 P38099]
−
** [http://www.uniprot.org/uniprot/O61143 O61143]
+
** [http://www.uniprot.org/uniprot/P27708 P27708]
−
** [http://www.uniprot.org/uniprot/Q9C102 Q9C102]
+
** [http://www.uniprot.org/uniprot/Q91437 Q91437]
−
** [http://www.uniprot.org/uniprot/Q9P540 Q9P540]
+
** [http://www.uniprot.org/uniprot/O28994 O28994]
 +
** [http://www.uniprot.org/uniprot/P57689 P57689]
 +
** [http://www.uniprot.org/uniprot/P38098 P38098]
 +
** [http://www.uniprot.org/uniprot/Q9WZ27 Q9WZ27]
 +
** [http://www.uniprot.org/uniprot/Q9PMG8 Q9PMG8]
 +
** [http://www.uniprot.org/uniprot/Q9JXW8 Q9JXW8]
 +
** [http://www.uniprot.org/uniprot/Q9JVZ6 Q9JVZ6]
 +
** [http://www.uniprot.org/uniprot/P25993 P25993]
 +
** [http://www.uniprot.org/uniprot/Q9PIL7 Q9PIL7]
 +
** [http://www.uniprot.org/uniprot/P25994 P25994]
 +
** [http://www.uniprot.org/uniprot/Q9JW02 Q9JW02]
 +
** [http://www.uniprot.org/uniprot/O25577 O25577]
 +
** [http://www.uniprot.org/uniprot/P52557 P52557]
 +
** [http://www.uniprot.org/uniprot/P46537 P46537]
 +
** [http://www.uniprot.org/uniprot/P18185 P18185]
 +
** [http://www.uniprot.org/uniprot/P07259 P07259]
 +
** [http://www.uniprot.org/uniprot/P20054 P20054]
 +
** [http://www.uniprot.org/uniprot/P05990 P05990]
 +
** [http://www.uniprot.org/uniprot/P14845 P14845]
 +
** [http://www.uniprot.org/uniprot/Q06950 Q06950]
 +
** [http://www.uniprot.org/uniprot/Q92115 Q92115]
 +
** [http://www.uniprot.org/uniprot/Q09794 Q09794]
 +
** [http://www.uniprot.org/uniprot/P03965 P03965]
 +
** [http://www.uniprot.org/uniprot/P07258 P07258]
 +
** [http://www.uniprot.org/uniprot/P00968 P00968]
 +
** [http://www.uniprot.org/uniprot/P0A6F1 P0A6F1]
 +
** [http://www.uniprot.org/uniprot/P93345 P93345]
 +
** [http://www.uniprot.org/uniprot/Q27732 Q27732]
 +
** [http://www.uniprot.org/uniprot/Q27448 Q27448]
 +
** [http://www.uniprot.org/uniprot/O50236 O50236]
 +
** [http://www.uniprot.org/uniprot/O94313 O94313]
 +
** [http://www.uniprot.org/uniprot/Q59968 Q59968]
 +
** [http://www.uniprot.org/uniprot/Q59969 Q59969]
 +
** [http://www.uniprot.org/uniprot/O50301 O50301]
 +
** [http://www.uniprot.org/uniprot/O50302 O50302]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-1.4.1.14}}
+
{{#set: common name=carbamoyl_phosphate_synthetase}}
−
{{#set: gene associated=Tiso_gene_11511|Tiso_gene_2581|Tiso_gene_1154}}
+
{{#set: ec number=EC-6.3.5.5}}
−
{{#set: in pathway=GLUGLNSYN-PWY|PWY-6963}}
+
{{#set: gene associated=Tiso_gene_4976|Tiso_gene_4975|Tiso_gene_4685}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=ARGSYN-PWY|PWY-5154|PWY-7400|ARGSYNBSUB-PWY|PWY-7790|PWY-7791|PWY-5686}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
+
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=primary_network}}
+

Latest revision as of 21:06, 21 March 2018

Reaction CARBPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • carbamoyl_phosphate_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 L-glutamine[c] + 2 ATP[c] + 1 hydrogencarbonate[c] => 1 carbamoyl phosphate[c] + 2 H+[c] + 1 phosphate[c] + 2 ADP[c] + 1 L-glutamate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine): ARGSYN-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5154, L-arginine biosynthesis III (via N-acetyl-L-citrulline): PWY-5154
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-7400, L-arginine biosynthesis IV (archaebacteria): PWY-7400
    • 7 reactions found over 9 reactions in the full pathway
  • ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle): ARGSYNBSUB-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7790, UMP biosynthesis II: PWY-7790
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III: PWY-7791
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5686, UMP biosynthesis I: PWY-5686
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CARBPSYN-RXN&oldid=45930"