Difference between revisions of "Tiso gene 7776"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERILEU-RXN BRANCHED-CHAINAMINOTRANSFERILEU-RXN] == * direction: ** REVERSI...")
 
(Created page with "Category:Gene == Gene Tiso_gene_7776 == * right end position: ** 7026 * transcription direction: ** NEGATIVE * left end position: ** 4073 * centisome position: ** 37.65717...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERILEU-RXN BRANCHED-CHAINAMINOTRANSFERILEU-RXN] ==
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== Gene Tiso_gene_7776 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 7026
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* common name:
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* transcription direction:
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** branched-chain_amino_acid_aminotransferase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.6.1.42 EC-2.6.1.42]
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** 4073
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* centisome position:
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** 37.657173   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GLYOHMETRANS-RXN]]
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** 1 [[ILE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[2-KETO-3-METHYL-VALERATE]][c] '''+''' 1 [[GLT]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 L-isoleucine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 (S)-3-methyl-2-oxopentanoate[c] '''+''' 1 L-glutamate[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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* Reaction: [[RXN0-5234]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-experimental_annotation]]
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* [[Tiso_gene_14984]]
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*** Assignment: automated-name-match
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** IN-SILICO_ANNOTATION
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== Pathways associated ==
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***EC-NUMBER
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* [[PWY-2161]]
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-1622]]
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***EC-NUMBER
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* [[PWY-3841]]
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** [[pantograph]]-[[athaliana]]
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* [[1CMET2-PWY]]
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** [[pantograph]]-[[synechocystis]]
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* [[PWY-3661]]
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** [[pantograph]]-[[esiliculosus]]
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* [[GLYSYN-PWY]]
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** [[pantograph]]-[[creinhardtii]]
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* [[PWY-5497]]
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* [[Tiso_gene_17748]]
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* [[PWY-2201]]
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** [[pantograph]]-[[athaliana]]
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* [[PWY-181]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-3661-1]]
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* [[Tiso_gene_18403]]
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** [[pantograph]]-[[synechocystis]]
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== Pathways ==
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* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine): [http://metacyc.org/META/NEW-IMAGE?object=ILEUSYN-PWY ILEUSYN-PWY]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[ILEUDEG-PWY]], L-isoleucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ILEUDEG-PWY ILEUDEG-PWY]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5108]], L-isoleucine biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5108 PWY-5108]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5103]], L-isoleucine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5103 PWY-5103]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5101]], L-isoleucine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5101 PWY-5101]
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** '''5''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5078]], L-isoleucine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5078 PWY-5078]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5104]], L-isoleucine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5104 PWY-5104]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=7026}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24801 24801]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=4073}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02199 R02199]
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{{#set: centisome position=37.657173    }}
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* UNIPROT:
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{{#set: reaction associated=GLYOHMETRANS-RXN|RXN0-5234}}
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** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
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{{#set: pathway associated=PWY-2161|PWY-1622|PWY-3841|1CMET2-PWY|PWY-3661|GLYSYN-PWY|PWY-5497|PWY-2201|PWY-181|PWY-3661-1}}
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** [http://www.uniprot.org/uniprot/P38891 P38891]
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** [http://www.uniprot.org/uniprot/P47176 P47176]
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** [http://www.uniprot.org/uniprot/O86505 O86505]
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** [http://www.uniprot.org/uniprot/O14370 O14370]
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** [http://www.uniprot.org/uniprot/O32954 O32954]
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** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=branched-chain_amino_acid_aminotransferase}}
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{{#set: ec number=EC-2.6.1.42}}
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{{#set: gene associated=Tiso_gene_14984|Tiso_gene_17748|Tiso_gene_18403}}
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{{#set: in pathway=ILEUSYN-PWY|ILEUDEG-PWY|PWY-5108|PWY-5103|PWY-5101|PWY-5078|PWY-5104}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:06, 21 March 2018

Gene Tiso_gene_7776

  • right end position:
    • 7026
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 4073
  • centisome position:
    • 37.657173
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_7776&oldid=45955"