Difference between revisions of "PHENYLALANINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-7682 CPD-7682] == * smiles: ** C(C1(CCCC=N1))([O-])=O * inchi key: ** InChIKey=CSDPVAKVEWET...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-7682 CPD-7682] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] ==
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* smiles:
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* direction:
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** C(C1(CCCC=N1))([O-])=O
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** LEFT-TO-RIGHT
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* inchi key:
+
−
** InChIKey=CSDPVAKVEWETFG-YFKPBYRVSA-M
+
 
* common name:
 
* common name:
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** (S)-2,3,4,5-tetrahydropiperidine-2-carboxylate
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** ORF
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* molecular weight:
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** phenylalanine_trna_synthtetase
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** 126.135   
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** alpha_subunit_of_phenylalanyl-trna_synthetase
 +
** ribosome_biogenesis_protein
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.1.1.20 EC-6.1.1.20]
 
* Synonym(s):
 
* Synonym(s):
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** Δ1-piperideine-6-carboxylate
 
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** Δ6-piperideine-2-carboxylate
 
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** 1,6-didehydropiperidine-2-carboxylate
 
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** 2,3,4,5-tetrahydropyridine-2-carboxylate
 
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** 1-piperideine 6-carboxylate
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-8162]]
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* With identifiers:
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* [[RXN-10855]]
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** 1 [[ATP]][c] '''+''' 1 [[PHE-tRNAs]][c] '''+''' 1 [[PHE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-PHE-tRNAs]][c]
−
== Reaction(s) known to produce the compound ==
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 ATP[c] '''+''' 1 a tRNAphe[c] '''+''' 1 L-phenylalanine[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-phenylalanyl-[tRNAphe][c]
−
* [[RXN-8173]]
+
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_16467]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_16650]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1625]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4232]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-CPD:
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* RHEA:
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** [http://www.genome.jp/dbget-bin/www_bget?C00450 C00450]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19413 19413]
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* CHEBI:
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* LIGAND-RXN:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58769 58769]
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** [http://www.genome.jp/dbget-bin/www_bget?R03660 R03660]
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* METABOLIGHTS : MTBLC58769
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* UNIPROT:
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* PUBCHEM:
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** [http://www.uniprot.org/uniprot/P94283 P94283]
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=45266761 45266761]
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** [http://www.uniprot.org/uniprot/Q9ZDB4 Q9ZDB4]
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* HMDB : HMDB59657
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** [http://www.uniprot.org/uniprot/Q9WZS9 Q9WZS9]
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{{#set: smiles=C(C1(CCCC=N1))([O-])=O}}
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** [http://www.uniprot.org/uniprot/Q9PP34 Q9PP34]
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{{#set: inchi key=InChIKey=CSDPVAKVEWETFG-YFKPBYRVSA-M}}
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** [http://www.uniprot.org/uniprot/P56145 P56145]
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{{#set: common name=(S)-2,3,4,5-tetrahydropiperidine-2-carboxylate}}
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** [http://www.uniprot.org/uniprot/O67620 O67620]
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{{#set: molecular weight=126.135    }}
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** [http://www.uniprot.org/uniprot/O73984 O73984]
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{{#set: common name=Δ1-piperideine-6-carboxylate|Δ6-piperideine-2-carboxylate|1,6-didehydropiperidine-2-carboxylate|2,3,4,5-tetrahydropyridine-2-carboxylate|1-piperideine 6-carboxylate}}
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** [http://www.uniprot.org/uniprot/Q9Z6R6 Q9Z6R6]
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{{#set: consumed by=RXN-8162|RXN-10855}}
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** [http://www.uniprot.org/uniprot/Q58508 Q58508]
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{{#set: consumed or produced by=RXN-8173}}
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** [http://www.uniprot.org/uniprot/P56146 P56146]
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** [http://www.uniprot.org/uniprot/O27545 O27545]
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** [http://www.uniprot.org/uniprot/O26837 O26837]
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** [http://www.uniprot.org/uniprot/O58391 O58391]
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** [http://www.uniprot.org/uniprot/O83938 O83938]
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** [http://www.uniprot.org/uniprot/P47436 P47436]
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** [http://www.uniprot.org/uniprot/O67087 O67087]
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** [http://www.uniprot.org/uniprot/O83059 O83059]
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** [http://www.uniprot.org/uniprot/O84843 O84843]
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** [http://www.uniprot.org/uniprot/Q9UYX3 Q9UYX3]
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** [http://www.uniprot.org/uniprot/Q9Z7W0 Q9Z7W0]
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** [http://www.uniprot.org/uniprot/Q9PJR8 Q9PJR8]
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** [http://www.uniprot.org/uniprot/P47437 P47437]
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** [http://www.uniprot.org/uniprot/Q9ZKF9 Q9ZKF9]
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** [http://www.uniprot.org/uniprot/Q9UYX2 Q9UYX2]
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** [http://www.uniprot.org/uniprot/Q9ZKF8 Q9ZKF8]
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** [http://www.uniprot.org/uniprot/Q9JR76 Q9JR76]
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** [http://www.uniprot.org/uniprot/Q57911 Q57911]
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** [http://www.uniprot.org/uniprot/P43819 P43819]
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** [http://www.uniprot.org/uniprot/P94282 P94282]
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** [http://www.uniprot.org/uniprot/O84481 O84481]
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** [http://www.uniprot.org/uniprot/Q9ZDB5 Q9ZDB5]
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** [http://www.uniprot.org/uniprot/Q9WZS8 Q9WZS8]
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** [http://www.uniprot.org/uniprot/Q9RRX8 Q9RRX8]
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** [http://www.uniprot.org/uniprot/Q9PP35 Q9PP35]
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** [http://www.uniprot.org/uniprot/P43820 P43820]
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** [http://www.uniprot.org/uniprot/Q46107 Q46107]
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** [http://www.uniprot.org/uniprot/P15434 P15434]
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** [http://www.uniprot.org/uniprot/Q5SGX1 Q5SGX1]
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** [http://www.uniprot.org/uniprot/P37984 P37984]
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** [http://www.uniprot.org/uniprot/P51346 P51346]
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** [http://www.uniprot.org/uniprot/P75563 P75563]
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** [http://www.uniprot.org/uniprot/P75564 P75564]
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** [http://www.uniprot.org/uniprot/Q55187 Q55187]
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** [http://www.uniprot.org/uniprot/P95960 P95960]
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** [http://www.uniprot.org/uniprot/P95961 P95961]
 +
** [http://www.uniprot.org/uniprot/Q49032 Q49032]
 +
** [http://www.uniprot.org/uniprot/P08312 P08312]
 +
** [http://www.uniprot.org/uniprot/P07395 P07395]
 +
** [http://www.uniprot.org/uniprot/O42870 O42870]
 +
** [http://www.uniprot.org/uniprot/O13432 O13432]
 +
** [http://www.uniprot.org/uniprot/Q9GYS8 Q9GYS8]
 +
** [http://www.uniprot.org/uniprot/O42849 O42849]
 +
** [http://www.uniprot.org/uniprot/P17921 P17921]
 +
** [http://www.uniprot.org/uniprot/P17922 P17922]
 +
** [http://www.uniprot.org/uniprot/P15625 P15625]
 +
** [http://www.uniprot.org/uniprot/P08425 P08425]
 +
** [http://www.uniprot.org/uniprot/P15624 P15624]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=phenylalanine_trna_synthtetase}}
 +
{{#set: common name=alpha_subunit_of_phenylalanyl-trna_synthetase}}
 +
{{#set: common name=ribosome_biogenesis_protein}}
 +
{{#set: ec number=EC-6.1.1.20}}
 +
{{#set: gene associated=Tiso_gene_16467|Tiso_gene_16650|Tiso_gene_1625|Tiso_gene_4232}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:06, 21 March 2018

Reaction PHENYLALANINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • phenylalanine_trna_synthtetase
    • alpha_subunit_of_phenylalanyl-trna_synthetase
    • ribosome_biogenesis_protein
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 a tRNAphe[c] + 1 L-phenylalanine[c] => 1 AMP[c] + 1 diphosphate[c] + 1 an L-phenylalanyl-[tRNAphe][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PHENYLALANINE--TRNA-LIGASE-RXN&oldid=45984"