Difference between revisions of "PHENYLALANINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_7776 == * left end position: ** 4073 * transcription direction: ** NEGATIVE * right end position: ** 7026 * centisome position: ** 37.65717...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_7776 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] ==
−
* left end position:
+
* direction:
−
** 4073
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** LEFT-TO-RIGHT
−
* transcription direction:
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* common name:
−
** NEGATIVE
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** ORF
−
* right end position:
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** phenylalanine_trna_synthtetase
−
** 7026
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** alpha_subunit_of_phenylalanyl-trna_synthetase
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* centisome position:
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** ribosome_biogenesis_protein
−
** 37.657173   
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.1.1.20 EC-6.1.1.20]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
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== Reaction Formula ==
−
* [[GLYOHMETRANS-RXN]]
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* With identifiers:
−
** in-silico_annotation
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** 1 [[ATP]][c] '''+''' 1 [[PHE-tRNAs]][c] '''+''' 1 [[PHE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-PHE-tRNAs]][c]
−
***ec-number
+
* With common name(s):
−
** experimental_annotation
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** 1 ATP[c] '''+''' 1 a tRNAphe[c] '''+''' 1 L-phenylalanine[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-phenylalanyl-[tRNAphe][c]
−
***ec-number
+
 
−
* [[RXN0-5234]]
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== Genes associated with this reaction  ==
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** experimental_annotation
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Genes have been associated with this reaction based on different elements listed below.
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***automated-name-match
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* Gene: [[Tiso_gene_16467]]
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== Pathways associated ==
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-2161]]
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*** Assignment: EC-NUMBER
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* [[PWY-1622]]
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** Source: [[annotation-experimental_annotation]]
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* [[PWY-3841]]
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*** Assignment: EC-NUMBER
−
* [[1CMET2-PWY]]
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** Source: [[orthology-esiliculosus]]
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* [[PWY-3661]]
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* Gene: [[Tiso_gene_16650]]
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* [[GLYSYN-PWY]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-5497]]
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*** Assignment: EC-NUMBER
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* [[PWY-2201]]
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* Gene: [[Tiso_gene_1625]]
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* [[PWY-181]]
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** Source: [[annotation-in-silico_annotation]]
−
* [[PWY-3661-1]]
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*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4232]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=4073}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19413 19413]
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{{#set: right end position=7026}}
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* LIGAND-RXN:
−
{{#set: centisome position=37.657173    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03660 R03660]
−
{{#set: reaction associated=GLYOHMETRANS-RXN|RXN0-5234}}
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* UNIPROT:
−
{{#set: pathway associated=PWY-2161|PWY-1622|PWY-3841|1CMET2-PWY|PWY-3661|GLYSYN-PWY|PWY-5497|PWY-2201|PWY-181|PWY-3661-1}}
+
** [http://www.uniprot.org/uniprot/P94283 P94283]
 +
** [http://www.uniprot.org/uniprot/Q9ZDB4 Q9ZDB4]
 +
** [http://www.uniprot.org/uniprot/Q9WZS9 Q9WZS9]
 +
** [http://www.uniprot.org/uniprot/Q9PP34 Q9PP34]
 +
** [http://www.uniprot.org/uniprot/P56145 P56145]
 +
** [http://www.uniprot.org/uniprot/O67620 O67620]
 +
** [http://www.uniprot.org/uniprot/O73984 O73984]
 +
** [http://www.uniprot.org/uniprot/Q9Z6R6 Q9Z6R6]
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** [http://www.uniprot.org/uniprot/Q58508 Q58508]
 +
** [http://www.uniprot.org/uniprot/P56146 P56146]
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** [http://www.uniprot.org/uniprot/O27545 O27545]
 +
** [http://www.uniprot.org/uniprot/O26837 O26837]
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** [http://www.uniprot.org/uniprot/O58391 O58391]
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** [http://www.uniprot.org/uniprot/O83938 O83938]
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** [http://www.uniprot.org/uniprot/P47436 P47436]
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** [http://www.uniprot.org/uniprot/O67087 O67087]
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** [http://www.uniprot.org/uniprot/O83059 O83059]
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** [http://www.uniprot.org/uniprot/O84843 O84843]
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** [http://www.uniprot.org/uniprot/Q9UYX3 Q9UYX3]
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** [http://www.uniprot.org/uniprot/Q9Z7W0 Q9Z7W0]
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** [http://www.uniprot.org/uniprot/Q9PJR8 Q9PJR8]
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** [http://www.uniprot.org/uniprot/P47437 P47437]
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** [http://www.uniprot.org/uniprot/Q9ZKF9 Q9ZKF9]
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** [http://www.uniprot.org/uniprot/Q9UYX2 Q9UYX2]
 +
** [http://www.uniprot.org/uniprot/Q9ZKF8 Q9ZKF8]
 +
** [http://www.uniprot.org/uniprot/Q9JR76 Q9JR76]
 +
** [http://www.uniprot.org/uniprot/Q57911 Q57911]
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** [http://www.uniprot.org/uniprot/P43819 P43819]
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** [http://www.uniprot.org/uniprot/P94282 P94282]
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** [http://www.uniprot.org/uniprot/O84481 O84481]
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** [http://www.uniprot.org/uniprot/Q9ZDB5 Q9ZDB5]
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** [http://www.uniprot.org/uniprot/Q9WZS8 Q9WZS8]
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** [http://www.uniprot.org/uniprot/Q9RRX8 Q9RRX8]
 +
** [http://www.uniprot.org/uniprot/Q9PP35 Q9PP35]
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** [http://www.uniprot.org/uniprot/P43820 P43820]
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** [http://www.uniprot.org/uniprot/Q46107 Q46107]
 +
** [http://www.uniprot.org/uniprot/P15434 P15434]
 +
** [http://www.uniprot.org/uniprot/Q5SGX1 Q5SGX1]
 +
** [http://www.uniprot.org/uniprot/P37984 P37984]
 +
** [http://www.uniprot.org/uniprot/P51346 P51346]
 +
** [http://www.uniprot.org/uniprot/P75563 P75563]
 +
** [http://www.uniprot.org/uniprot/P75564 P75564]
 +
** [http://www.uniprot.org/uniprot/Q55187 Q55187]
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** [http://www.uniprot.org/uniprot/P95960 P95960]
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** [http://www.uniprot.org/uniprot/P95961 P95961]
 +
** [http://www.uniprot.org/uniprot/Q49032 Q49032]
 +
** [http://www.uniprot.org/uniprot/P08312 P08312]
 +
** [http://www.uniprot.org/uniprot/P07395 P07395]
 +
** [http://www.uniprot.org/uniprot/O42870 O42870]
 +
** [http://www.uniprot.org/uniprot/O13432 O13432]
 +
** [http://www.uniprot.org/uniprot/Q9GYS8 Q9GYS8]
 +
** [http://www.uniprot.org/uniprot/O42849 O42849]
 +
** [http://www.uniprot.org/uniprot/P17921 P17921]
 +
** [http://www.uniprot.org/uniprot/P17922 P17922]
 +
** [http://www.uniprot.org/uniprot/P15625 P15625]
 +
** [http://www.uniprot.org/uniprot/P08425 P08425]
 +
** [http://www.uniprot.org/uniprot/P15624 P15624]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=phenylalanine_trna_synthtetase}}
 +
{{#set: common name=alpha_subunit_of_phenylalanyl-trna_synthetase}}
 +
{{#set: common name=ribosome_biogenesis_protein}}
 +
{{#set: ec number=EC-6.1.1.20}}
 +
{{#set: gene associated=Tiso_gene_16467|Tiso_gene_16650|Tiso_gene_1625|Tiso_gene_4232}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:06, 21 March 2018

Reaction PHENYLALANINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • phenylalanine_trna_synthtetase
    • alpha_subunit_of_phenylalanyl-trna_synthetase
    • ribosome_biogenesis_protein
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 a tRNAphe[c] + 1 L-phenylalanine[c] => 1 AMP[c] + 1 diphosphate[c] + 1 an L-phenylalanyl-[tRNAphe][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PHENYLALANINE--TRNA-LIGASE-RXN&oldid=45984"