Difference between revisions of "SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-7248 RXN0-7248] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** long...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN] == * direction:...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-7248 RXN0-7248] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** polyketide_synthase
+
** glutarate-semialdehyde_dehydrogenase
−
** long_chain_acyl-_synthetase
+
−
** acyl-_synthetase
+
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/1.2.1.24 EC-1.2.1.24]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-9245]][e] '''+''' 1 [[PROTON]][e] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[CPD-10269]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[SUCC-S-ALD]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[SUC]][c] '''+''' 2 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 palmitoleate[e] '''+''' 1 H+[e] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 palmitoleoyl-CoA[c] '''+''' 1 H+[c]
+
** 1 succinate semialdehyde[c] '''+''' 1 NAD+[c] '''+''' 1 H2O[c] '''=>''' 1 NADH[c] '''+''' 1 succinate[c] '''+''' 2 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_9394]]
+
* Gene: [[Tiso_gene_777]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_91]]
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_7855]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_6952]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_135]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_10876]]
+
** Source: [[orthology-creinhardtii]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_136]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_500]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4191]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_348]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-4321]], L-glutamate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6535]], 4-aminobutanoate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6535 PWY-6535]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[GLUDEG-I-PWY]], GABA shunt: [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-I-PWY GLUDEG-I-PWY]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6473]], 4-aminobutanoate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6473 PWY-6473]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-creinhardtii]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13217 13217]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00713 R00713]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P51649 P51649]
 +
** [http://www.uniprot.org/uniprot/P51650 P51650]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: common name=glutarate-semialdehyde_dehydrogenase}}
−
{{#set: common name=long_chain_acyl-_synthetase}}
+
{{#set: ec number=EC-1.2.1.24}}
−
{{#set: common name=acyl-_synthetase}}
+
{{#set: gene associated=Tiso_gene_777|Tiso_gene_91|Tiso_gene_6952}}
−
{{#set: common name=ORF}}
+
{{#set: in pathway=PWY-4321|PWY-6535|GLUDEG-I-PWY|PWY-6473}}
−
{{#set: ec number=EC-6.2.1.3}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: gene associated=Tiso_gene_9394|Tiso_gene_7855|Tiso_gene_135|Tiso_gene_10876|Tiso_gene_13394|Tiso_gene_136|Tiso_gene_500|Tiso_gene_4191|Tiso_gene_348}}
+
{{#set: reconstruction source=orthology-creinhardtii|annotation-experimental_annotation|annotation-in-silico_annotation}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 21:07, 21 March 2018

Reaction SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • glutarate-semialdehyde_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 succinate semialdehyde[c] + 1 NAD+[c] + 1 H2O[c] => 1 NADH[c] + 1 succinate[c] + 2 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-4321, L-glutamate degradation IV: PWY-4321
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6535, 4-aminobutanoate degradation I: PWY-6535
    • 2 reactions found over 2 reactions in the full pathway
  • GLUDEG-I-PWY, GABA shunt: GLUDEG-I-PWY
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6473, 4-aminobutanoate degradation IV: PWY-6473
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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