Difference between revisions of "Tiso gene 7157"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN] == * direction:...")
(Created page with "Category:Gene == Gene Tiso_gene_7157 == * right end position: ** 3029 * transcription direction: ** POSITIVE * left end position: ** 988 * centisome position: ** 8.637118...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN] ==
+
== Gene Tiso_gene_7157 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 3029
−
* common name:
+
* transcription direction:
−
** glutarate-semialdehyde_dehydrogenase
+
** POSITIVE
−
* ec number:
+
* left end position:
−
** [http://enzyme.expasy.org/EC/1.2.1.24 EC-1.2.1.24]
+
** 988
 +
* centisome position:
 +
** 8.637118   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[6PGLUCONDEHYDROG-RXN]]
−
** 1 [[SUCC-S-ALD]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[SUC]][c] '''+''' 2 [[PROTON]][c]
+
** Source: [[orthology-synechocystis]]
−
* With common name(s):
+
−
** 1 succinate semialdehyde[c] '''+''' 1 NAD+[c] '''+''' 1 H2O[c] '''=>''' 1 NADH[c] '''+''' 1 succinate[c] '''+''' 2 H+[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* Gene: [[Tiso_gene_777]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Tiso_gene_91]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Tiso_gene_6952]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-creinhardtii]]
+
−
== Pathways  ==
+
−
* [[PWY-4321]], L-glutamate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321]
+
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-6535]], 4-aminobutanoate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6535 PWY-6535]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[GLUDEG-I-PWY]], GABA shunt: [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-I-PWY GLUDEG-I-PWY]
+
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-6473]], 4-aminobutanoate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6473 PWY-6473]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
−
*** Tool: [[pantograph]]
+
* Reaction: [[RXN-9952]]
−
* Category: [[annotation]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways associated ==
 +
* [[P122-PWY]]
 +
* [[OXIDATIVEPENT-PWY]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=3029}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13217 13217]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=988}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00713 R00713]
+
{{#set: centisome position=8.637118    }}
−
* UNIPROT:
+
{{#set: reaction associated=6PGLUCONDEHYDROG-RXN|RXN-9952}}
−
** [http://www.uniprot.org/uniprot/P51649 P51649]
+
{{#set: pathway associated=P122-PWY|OXIDATIVEPENT-PWY}}
−
** [http://www.uniprot.org/uniprot/P51650 P51650]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=glutarate-semialdehyde_dehydrogenase}}
+
−
{{#set: ec number=EC-1.2.1.24}}
+
−
{{#set: gene associated=Tiso_gene_777|Tiso_gene_91|Tiso_gene_6952}}
+
−
{{#set: in pathway=PWY-4321|PWY-6535|GLUDEG-I-PWY|PWY-6473}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=orthology-creinhardtii|annotation-experimental_annotation|annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:07, 21 March 2018

Gene Tiso_gene_7157

  • right end position:
    • 3029
  • transcription direction:
    • POSITIVE
  • left end position:
    • 988
  • centisome position:
    • 8.637118
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_7157&oldid=46058"