Difference between revisions of "RXN1F-163"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--TRNA-LIGASE-RXN ALANINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-163 RXN1F-163] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--TRNA-LIGASE-RXN ALANINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-163 RXN1F-163] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** threonine_alanine_trna_ligase_subfamily_protein
 
−
** ORF
 
−
** alanyl-trna_synthetase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.7 EC-6.1.1.7]
+
** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ALA-tRNAs]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-ALA-tRNAs]][c]
+
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD1F-97]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[CPD1F-120]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a tRNAala[c] '''+''' 1 L-alanine[c] '''+''' 1 H+[c] '''+''' 1 ATP[c] '''=>''' 1 AMP[c] '''+''' 1 H+[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-alanyl-[tRNAala][c]
+
** 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 gibberellin A15 (open lactone form)[c] '''=>''' 1 succinate[c] '''+''' 1 gibberellin A24[c] '''+''' 1 H2O[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_2298]]
+
* Gene: [[Tiso_gene_3330]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_3249]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18609]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_19573]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18607]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY-5070]], gibberellin biosynthesis I (non C-3, non C-13 hydroxylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5070 PWY-5070]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-esiliculosus]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12540 12540]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03038 R03038]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06323 R06323]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P56452 P56452]
+
−
** [http://www.uniprot.org/uniprot/O27718 O27718]
+
−
** [http://www.uniprot.org/uniprot/O34526 O34526]
+
−
** [http://www.uniprot.org/uniprot/P47534 P47534]
+
−
** [http://www.uniprot.org/uniprot/O58035 O58035]
+
−
** [http://www.uniprot.org/uniprot/Q9PI05 Q9PI05]
+
−
** [http://www.uniprot.org/uniprot/Q9JTG4 Q9JTG4]
+
−
** [http://www.uniprot.org/uniprot/Q57984 Q57984]
+
−
** [http://www.uniprot.org/uniprot/O51238 O51238]
+
−
** [http://www.uniprot.org/uniprot/Q9CEW0 Q9CEW0]
+
−
** [http://www.uniprot.org/uniprot/O83980 O83980]
+
−
** [http://www.uniprot.org/uniprot/Q9X1B6 Q9X1B6]
+
−
** [http://www.uniprot.org/uniprot/Q9ZJY5 Q9ZJY5]
+
−
** [http://www.uniprot.org/uniprot/O67323 O67323]
+
−
** [http://www.uniprot.org/uniprot/Q9ZCA4 Q9ZCA4]
+
−
** [http://www.uniprot.org/uniprot/Q9Z714 Q9Z714]
+
−
** [http://www.uniprot.org/uniprot/P49588 P49588]
+
−
** [http://www.uniprot.org/uniprot/P43815 P43815]
+
−
** [http://www.uniprot.org/uniprot/P50475 P50475]
+
−
** [http://www.uniprot.org/uniprot/P24075 P24075]
+
−
** [http://www.uniprot.org/uniprot/P27866 P27866]
+
−
** [http://www.uniprot.org/uniprot/P35029 P35029]
+
−
** [http://www.uniprot.org/uniprot/P40825 P40825]
+
−
** [http://www.uniprot.org/uniprot/P75368 P75368]
+
−
** [http://www.uniprot.org/uniprot/Q48976 Q48976]
+
−
** [http://www.uniprot.org/uniprot/P00957 P00957]
+
−
** [http://www.uniprot.org/uniprot/P21894 P21894]
+
−
** [http://www.uniprot.org/uniprot/O50189 O50189]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=threonine_alanine_trna_ligase_subfamily_protein}}
+
{{#set: ec number=EC-1.14.11}}
−
{{#set: common name=ORF}}
+
{{#set: gene associated=Tiso_gene_3330}}
−
{{#set: common name=alanyl-trna_synthetase}}
+
{{#set: in pathway=PWY-5070}}
−
{{#set: ec number=EC-6.1.1.7}}
+
−
{{#set: gene associated=Tiso_gene_2298|Tiso_gene_3249|Tiso_gene_18609|Tiso_gene_19573|Tiso_gene_18607}}
+
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 21:07, 21 March 2018

Reaction RXN1F-163

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5070, gibberellin biosynthesis I (non C-3, non C-13 hydroxylation): PWY-5070
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN1F-163&oldid=46123"