Difference between revisions of "RXN-12750"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=INORGPYROPHOSPHAT-RXN INORGPYROPHOSPHAT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Tra...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12750 RXN-12750] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-[(3aS,4S,5R,7aS)-5-hydrox...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=INORGPYROPHOSPHAT-RXN INORGPYROPHOSPHAT-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12750 RXN-12750] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Transmembrane_protein
+
** 3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoate dehydrogenase
−
** inorganic_pyrophosphatase
+
** 3-hydroxyacyl-_dehydrogenase
−
** ORF
+
** hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
−
** h+-translocating_pyrophosphatase
+
** hydroxyacyl-coenzyme_a_mitochondrial
−
** Inorganic pyrophosphatase
+
−
** mitochondrial_carrier_protein
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.1.1 EC-3.6.1.1]
+
** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PPI]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 2 [[Pi]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[CPD-13757]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[CPD-13758]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 diphosphate[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 2 phosphate[c]
+
** 1 NAD+[c] '''+''' 1 3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA[c] '''=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6277]]
+
* Gene: [[Tiso_gene_14026]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_2851]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_2850]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_14027]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_16197]]
+
* Gene: [[Tiso_gene_18839]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
* Gene: [[Tiso_gene_14262]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_9490]]
+
** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_5857]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_16375]]
+
* Gene: [[Tiso_gene_18838]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_17878]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_7014]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_15874]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17879]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1110]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_17889]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7805]], aminomethylphosphonate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7805 PWY-7805]
+
* [[PWY-6944]], androstenedione degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6944 PWY-6944]
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''15''' reactions in the full pathway
−
* [[PWY-7807]], glyphosate degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7807 PWY-7807]
+
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[creinhardtii]]
+
*** Tool: [[pantograph]]
−
*** [[synechocystis]]
+
* Category: [[annotation]]
−
*** [[esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
*** [[athaliana]]
+
*** Tool: [[pathwaytools]]
−
* [[manual]]:
+
** Source: [[annotation-in-silico_annotation]]
−
** [[primary_network]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24576 24576]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00004 R00004]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P21616 P21616]
 
−
** [http://www.uniprot.org/uniprot/P31414 P31414]
 
−
** [http://www.uniprot.org/uniprot/P28239 P28239]
 
−
** [http://www.uniprot.org/uniprot/P37980 P37980]
 
−
** [http://www.uniprot.org/uniprot/P84491 P84491]
 
−
** [http://www.uniprot.org/uniprot/O59570 O59570]
 
−
** [http://www.uniprot.org/uniprot/Q9S941 Q9S941]
 
−
** [http://www.uniprot.org/uniprot/Q9S939 Q9S939]
 
−
** [http://www.uniprot.org/uniprot/Q9S936 Q9S936]
 
−
** [http://www.uniprot.org/uniprot/O26363 O26363]
 
−
** [http://www.uniprot.org/uniprot/Q9S940 Q9S940]
 
−
** [http://www.uniprot.org/uniprot/Q9S938 Q9S938]
 
−
** [http://www.uniprot.org/uniprot/Q9S937 Q9S937]
 
−
** [http://www.uniprot.org/uniprot/Q9PHM9 Q9PHM9]
 
−
** [http://www.uniprot.org/uniprot/Q9UY24 Q9UY24]
 
−
** [http://www.uniprot.org/uniprot/Q9JVG3 Q9JVG3]
 
−
** [http://www.uniprot.org/uniprot/P47593 P47593]
 
−
** [http://www.uniprot.org/uniprot/Q974Y8 Q974Y8]
 
−
** [http://www.uniprot.org/uniprot/O05724 O05724]
 
−
** [http://www.uniprot.org/uniprot/P19514 P19514]
 
−
** [http://www.uniprot.org/uniprot/P00817 P00817]
 
−
** [http://www.uniprot.org/uniprot/P0A7A9 P0A7A9]
 
−
** [http://www.uniprot.org/uniprot/P13998 P13998]
 
−
** [http://www.uniprot.org/uniprot/P19117 P19117]
 
−
** [http://www.uniprot.org/uniprot/P21216 P21216]
 
−
** [http://www.uniprot.org/uniprot/Q9R5T3 Q9R5T3]
 
−
** [http://www.uniprot.org/uniprot/P37981 P37981]
 
−
** [http://www.uniprot.org/uniprot/Q43801 Q43801]
 
−
** [http://www.uniprot.org/uniprot/Q43798 Q43798]
 
−
** [http://www.uniprot.org/uniprot/Q43797 Q43797]
 
−
** [http://www.uniprot.org/uniprot/P50308 P50308]
 
−
** [http://www.uniprot.org/uniprot/Q43796 Q43796]
 
−
** [http://www.uniprot.org/uniprot/P93409 P93409]
 
−
** [http://www.uniprot.org/uniprot/Q8H616 Q8H616]
 
−
** [http://www.uniprot.org/uniprot/P93410 P93410]
 
−
** [http://www.uniprot.org/uniprot/P75250 P75250]
 
−
** [http://www.uniprot.org/uniprot/Q49071 Q49071]
 
−
** [http://www.uniprot.org/uniprot/O48556 O48556]
 
−
** [http://www.uniprot.org/uniprot/O22537 O22537]
 
−
** [http://www.uniprot.org/uniprot/O82793 O82793]
 
−
** [http://www.uniprot.org/uniprot/O23979 O23979]
 
−
** [http://www.uniprot.org/uniprot/O49949 O49949]
 
−
** [http://www.uniprot.org/uniprot/Q43187 Q43187]
 
−
** [http://www.uniprot.org/uniprot/O22124 O22124]
 
−
** [http://www.uniprot.org/uniprot/Q42650 Q42650]
 
−
** [http://www.uniprot.org/uniprot/Q42651 Q42651]
 
−
** [http://www.uniprot.org/uniprot/O65151 O65151]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Transmembrane_protein}}
+
{{#set: common name=3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoate dehydrogenase}}
−
{{#set: common name=inorganic_pyrophosphatase}}
+
{{#set: common name=3-hydroxyacyl-_dehydrogenase}}
−
{{#set: common name=ORF}}
+
{{#set: common name=hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit}}
−
{{#set: common name=h+-translocating_pyrophosphatase}}
+
{{#set: common name=hydroxyacyl-coenzyme_a_mitochondrial}}
−
{{#set: common name=Inorganic pyrophosphatase}}
+
{{#set: ec number=EC-1.1.1.35}}
−
{{#set: common name=mitochondrial_carrier_protein}}
+
{{#set: gene associated=Tiso_gene_14026|Tiso_gene_14027|Tiso_gene_18839|Tiso_gene_14262|Tiso_gene_5857|Tiso_gene_18838}}
−
{{#set: ec number=EC-3.6.1.1}}
+
{{#set: in pathway=PWY-6944}}
−
{{#set: gene associated=Tiso_gene_6277|Tiso_gene_2851|Tiso_gene_2850|Tiso_gene_16197|Tiso_gene_9490|Tiso_gene_16375|Tiso_gene_17878|Tiso_gene_7014|Tiso_gene_15874|Tiso_gene_17879|Tiso_gene_1110|Tiso_gene_17889}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: in pathway=PWY-7805|PWY-7807}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 21:07, 21 March 2018

Reaction RXN-12750

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoate dehydrogenase
    • 3-hydroxyacyl-_dehydrogenase
    • hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
    • hydroxyacyl-coenzyme_a_mitochondrial
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD+[c] + 1 3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA[c] => 1 H+[c] + 1 NADH[c] + 1 3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6944, androstenedione degradation: PWY-6944
    • 2 reactions found over 15 reactions in the full pathway

Reconstruction information

External links

"3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoate dehydrogenase" cannot be used as a page name in this wiki.





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