Difference between revisions of "CPD-10411"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=INORGPYROPHOSPHAT-RXN INORGPYROPHOSPHAT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Tra...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-10411 CPD-10411] == * smiles: ** C1(C(O)=C(O)C(O)=CC=1C2(OC3(C(CC(O)2)=C(O)C=C(O)C=3))) * c...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=INORGPYROPHOSPHAT-RXN INORGPYROPHOSPHAT-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-10411 CPD-10411] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C1(C(O)=C(O)C(O)=CC=1C2(OC3(C(CC(O)2)=C(O)C=C(O)C=3)))
 
* common name:
 
* common name:
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** Transmembrane_protein
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** (-)-epigallocatechin
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** inorganic_pyrophosphatase
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* inchi key:
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** ORF
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** InChIKey=XMOCLSLCDHWDHP-IUODEOHRSA-N
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** h+-translocating_pyrophosphatase
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* molecular weight:
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** Inorganic pyrophosphatase
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** 306.271   
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** mitochondrial_carrier_protein
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* ec number:
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** [http://enzyme.expasy.org/EC/3.6.1.1 EC-3.6.1.1]
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* Synonym(s):
 
* Synonym(s):
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** 2,3-cis-epigallocatechin
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[PPI]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 2 [[Pi]][c]
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* [[RXN-9723]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 diphosphate[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 2 phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_1110]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_6277]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_16197]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_2850]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_7014]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_2851]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_17878]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_17889]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_17879]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15874]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16375]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_9490]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-7805]], aminomethylphosphonate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7805 PWY-7805]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7807]], glyphosate degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7807 PWY-7807]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* LIPID_MAPS : LMPK12020004
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24576 24576]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=72277 72277]
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** [http://www.genome.jp/dbget-bin/www_bget?R00004 R00004]
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* HMDB : HMDB38361
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P21616 P21616]
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** [http://www.genome.jp/dbget-bin/www_bget?C12136 C12136]
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** [http://www.uniprot.org/uniprot/P31414 P31414]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P28239 P28239]
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** [http://www.chemspider.com/Chemical-Structure.65231.html 65231]
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** [http://www.uniprot.org/uniprot/P37980 P37980]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P84491 P84491]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=42255 42255]
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** [http://www.uniprot.org/uniprot/O59570 O59570]
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* METABOLIGHTS : MTBLC42255
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** [http://www.uniprot.org/uniprot/Q9S941 Q9S941]
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{{#set: smiles=C1(C(O)=C(O)C(O)=CC=1C2(OC3(C(CC(O)2)=C(O)C=C(O)C=3)))}}
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** [http://www.uniprot.org/uniprot/Q9S939 Q9S939]
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{{#set: common name=(-)-epigallocatechin}}
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** [http://www.uniprot.org/uniprot/Q9S936 Q9S936]
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{{#set: inchi key=InChIKey=XMOCLSLCDHWDHP-IUODEOHRSA-N}}
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** [http://www.uniprot.org/uniprot/O26363 O26363]
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{{#set: molecular weight=306.271    }}
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** [http://www.uniprot.org/uniprot/Q9S940 Q9S940]
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{{#set: common name=2,3-cis-epigallocatechin}}
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** [http://www.uniprot.org/uniprot/Q9S938 Q9S938]
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{{#set: produced by=RXN-9723}}
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** [http://www.uniprot.org/uniprot/Q9S937 Q9S937]
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** [http://www.uniprot.org/uniprot/Q9PHM9 Q9PHM9]
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** [http://www.uniprot.org/uniprot/Q9UY24 Q9UY24]
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** [http://www.uniprot.org/uniprot/Q9JVG3 Q9JVG3]
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** [http://www.uniprot.org/uniprot/P47593 P47593]
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** [http://www.uniprot.org/uniprot/Q974Y8 Q974Y8]
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** [http://www.uniprot.org/uniprot/O05724 O05724]
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** [http://www.uniprot.org/uniprot/P19514 P19514]
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** [http://www.uniprot.org/uniprot/P00817 P00817]
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** [http://www.uniprot.org/uniprot/P0A7A9 P0A7A9]
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** [http://www.uniprot.org/uniprot/P13998 P13998]
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** [http://www.uniprot.org/uniprot/P19117 P19117]
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** [http://www.uniprot.org/uniprot/P21216 P21216]
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** [http://www.uniprot.org/uniprot/Q9R5T3 Q9R5T3]
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** [http://www.uniprot.org/uniprot/P37981 P37981]
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** [http://www.uniprot.org/uniprot/Q43801 Q43801]
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** [http://www.uniprot.org/uniprot/Q43798 Q43798]
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** [http://www.uniprot.org/uniprot/Q43797 Q43797]
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** [http://www.uniprot.org/uniprot/P50308 P50308]
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** [http://www.uniprot.org/uniprot/Q43796 Q43796]
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** [http://www.uniprot.org/uniprot/P93409 P93409]
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** [http://www.uniprot.org/uniprot/Q8H616 Q8H616]
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** [http://www.uniprot.org/uniprot/P93410 P93410]
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** [http://www.uniprot.org/uniprot/P75250 P75250]
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** [http://www.uniprot.org/uniprot/Q49071 Q49071]
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** [http://www.uniprot.org/uniprot/O48556 O48556]
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** [http://www.uniprot.org/uniprot/O22537 O22537]
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** [http://www.uniprot.org/uniprot/O82793 O82793]
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** [http://www.uniprot.org/uniprot/O23979 O23979]
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** [http://www.uniprot.org/uniprot/O49949 O49949]
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** [http://www.uniprot.org/uniprot/Q43187 Q43187]
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** [http://www.uniprot.org/uniprot/O22124 O22124]
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** [http://www.uniprot.org/uniprot/Q42650 Q42650]
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** [http://www.uniprot.org/uniprot/Q42651 Q42651]
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** [http://www.uniprot.org/uniprot/O65151 O65151]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Transmembrane_protein}}
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{{#set: common name=inorganic_pyrophosphatase}}
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{{#set: common name=ORF}}
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{{#set: common name=h+-translocating_pyrophosphatase}}
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{{#set: common name=Inorganic pyrophosphatase}}
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{{#set: common name=mitochondrial_carrier_protein}}
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{{#set: ec number=EC-3.6.1.1}}
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{{#set: gene associated=Tiso_gene_1110|Tiso_gene_6277|Tiso_gene_16197|Tiso_gene_2850|Tiso_gene_7014|Tiso_gene_2851|Tiso_gene_17878|Tiso_gene_17889|Tiso_gene_17879|Tiso_gene_15874|Tiso_gene_16375|Tiso_gene_9490}}
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{{#set: in pathway=PWY-7805|PWY-7807}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:08, 21 March 2018

Metabolite CPD-10411

  • smiles:
    • C1(C(O)=C(O)C(O)=CC=1C2(OC3(C(CC(O)2)=C(O)C=C(O)C=3)))
  • common name:
    • (-)-epigallocatechin
  • inchi key:
    • InChIKey=XMOCLSLCDHWDHP-IUODEOHRSA-N
  • molecular weight:
    • 306.271
  • Synonym(s):
    • 2,3-cis-epigallocatechin

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • LIPID_MAPS : LMPK12020004
  • PUBCHEM:
  • HMDB : HMDB38361
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC42255




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-10411&oldid=46181"