Difference between revisions of "Tiso gene 12198"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN] == * direction: ** LEFT-TO-RIGHT...")
(Created page with "Category:Gene == Gene Tiso_gene_12198 == * right end position: ** 5134 * transcription direction: ** NEGATIVE * left end position: ** 73 * centisome position: ** 1.0102408...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN] ==
+
== Gene Tiso_gene_12198 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 5134
−
* common name:
+
* transcription direction:
−
** polyketide_synthase
+
** NEGATIVE
−
* ec number:
+
* left end position:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** 73
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
* centisome position:
−
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
+
** 1.0102408   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[5.4.99.17-RXN]]
−
** 1 [[OH-ACYL-ACP]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[TRANS-D2-ENOYL-ACP]][c]
+
−
* With common name(s):
+
−
** 1 a (3R)-3-hydroxyacyl-[acyl-carrier protein][c] '''=>''' 1 H2O[c] '''+''' 1 a trans-2-enoyl-[acyl-carrier protein][c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* Gene: [[Tiso_gene_13394]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_135]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_6884]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Tiso_gene_500]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_136]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_10876]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
== Pathways  ==
+
−
* [[FASYN-ELONG-PWY]], fatty acid elongation -- saturated: [http://metacyc.org/META/NEW-IMAGE?object=FASYN-ELONG-PWY FASYN-ELONG-PWY]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
== Pathways associated ==
 +
* [[PWY-7072]]
 +
* [[PWY-6098]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: right end position=5134}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R10208 R10208]
+
{{#set: transcription direction=NEGATIVE}}
−
* UNIPROT:
+
{{#set: left end position=73}}
−
** [http://www.uniprot.org/uniprot/P0A6Q3 P0A6Q3]
+
{{#set: centisome position=1.0102408    }}
−
** [http://www.uniprot.org/uniprot/P45159 P45159]
+
{{#set: reaction associated=5.4.99.17-RXN}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: pathway associated=PWY-7072|PWY-6098}}
−
{{#set: common name=polyketide_synthase}}
+
−
{{#set: ec number=EC-2.3.1.86}}
+
−
{{#set: ec number=EC-2.3.1.85}}
+
−
{{#set: ec number=EC-4.2.1.59}}
+
−
{{#set: gene associated=Tiso_gene_13394|Tiso_gene_135|Tiso_gene_6884|Tiso_gene_500|Tiso_gene_136|Tiso_gene_10876}}
+
−
{{#set: in pathway=FASYN-ELONG-PWY}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 20:08, 21 March 2018

Gene Tiso_gene_12198

  • right end position:
    • 5134
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 73
  • centisome position:
    • 1.0102408
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12198&oldid=46193"