Difference between revisions of "INORGPYROPHOSPHAT-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_14718 == * left end position: ** 3495 * transcription direction: ** POSITIVE * right end position: ** 5432 * centisome position: ** 63.9173...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=INORGPYROPHOSPHAT-RXN INORGPYROPHOSPHAT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Tra...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_14718 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=INORGPYROPHOSPHAT-RXN INORGPYROPHOSPHAT-RXN] ==
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* left end position:
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* direction:
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** 3495
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** Transmembrane_protein
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* right end position:
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** inorganic_pyrophosphatase
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** 5432
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** ORF
−
* centisome position:
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** h+-translocating_pyrophosphatase
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** 63.91734   
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** Inorganic pyrophosphatase
 +
** mitochondrial_carrier_protein
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.6.1.1 EC-3.6.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
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== Reaction Formula ==
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* [[2PGADEHYDRAT-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[PPI]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 2 [[Pi]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 diphosphate[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 2 phosphate[c]
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***ec-number
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** [[pantograph]]-[[athaliana]]
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
−
** [[pantograph]]-[[synechocystis]]
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* Gene: [[Tiso_gene_2850]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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* Gene: [[Tiso_gene_6277]]
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[orthology-esiliculosus]]
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* [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]]
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* Gene: [[Tiso_gene_15874]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: EC-NUMBER
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== Pathways associated ==
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** Source: [[annotation-experimental_annotation]]
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* [[GLYCOLYSIS]]
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*** Assignment: EC-NUMBER
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* [[PWY-6901]]
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* Gene: [[Tiso_gene_16197]]
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* [[P124-PWY]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-6142]]
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*** Assignment: EC-NUMBER
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* [[P341-PWY]]
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** Source: [[orthology-athaliana]]
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* [[PWY-1622]]
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** Source: [[orthology-synechocystis]]
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* [[GLUCONEO-PWY]]
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** Source: [[orthology-esiliculosus]]
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* [[PWY-6886]]
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* Gene: [[Tiso_gene_2851]]
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* [[PWY66-399]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-1042]]
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*** Assignment: EC-NUMBER
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* [[NPGLUCAT-PWY]]
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* Gene: [[Tiso_gene_17878]]
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* [[PWY-5723]]
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** Source: [[annotation-in-silico_annotation]]
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* [[ANAGLYCOLYSIS-PWY]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[PWY-5484]]
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* Gene: [[Tiso_gene_16375]]
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* [[PWY-7124]]
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** Source: [[orthology-esiliculosus]]
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* [[PWY-7003]]
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* Gene: [[Tiso_gene_9490]]
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* [[PWY-2221]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-6416]]
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*** Assignment: EC-NUMBER
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* [[PWY-6163]]
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** Source: [[orthology-athaliana]]
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* [[PWY-7218]]
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** Source: [[orthology-synechocystis]]
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* [[QUINATEDEG-PWY]]
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** Source: [[orthology-esiliculosus]]
−
* [[P122-PWY]]
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** Source: [[orthology-creinhardtii]]
−
* [[PWY-6707]]
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** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_17879]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_7014]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_17889]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1110]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
== Pathways  ==
 +
* [[PWY-7805]], aminomethylphosphonate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7805 PWY-7805]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7807]], glyphosate degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7807 PWY-7807]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=3495}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24576 24576]
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{{#set: right end position=5432}}
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* LIGAND-RXN:
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{{#set: centisome position=63.91734    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00004 R00004]
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{{#set: reaction associated=2PGADEHYDRAT-RXN|3-DEHYDROQUINATE-DEHYDRATASE-RXN}}
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* UNIPROT:
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{{#set: pathway associated=GLYCOLYSIS|PWY-6901|P124-PWY|PWY-6142|P341-PWY|PWY-1622|GLUCONEO-PWY|PWY-6886|PWY66-399|PWY-1042|NPGLUCAT-PWY|PWY-5723|ANAGLYCOLYSIS-PWY|PWY-5484|PWY-7124|PWY-7003|PWY-2221|PWY-6416|PWY-6163|PWY-7218|QUINATEDEG-PWY|P122-PWY|PWY-6707}}
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** [http://www.uniprot.org/uniprot/P21616 P21616]
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** [http://www.uniprot.org/uniprot/P31414 P31414]
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** [http://www.uniprot.org/uniprot/P28239 P28239]
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** [http://www.uniprot.org/uniprot/P37980 P37980]
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** [http://www.uniprot.org/uniprot/P84491 P84491]
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** [http://www.uniprot.org/uniprot/O59570 O59570]
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** [http://www.uniprot.org/uniprot/Q9S941 Q9S941]
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** [http://www.uniprot.org/uniprot/Q9S939 Q9S939]
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** [http://www.uniprot.org/uniprot/Q9S936 Q9S936]
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** [http://www.uniprot.org/uniprot/O26363 O26363]
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** [http://www.uniprot.org/uniprot/Q9S940 Q9S940]
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** [http://www.uniprot.org/uniprot/Q9S938 Q9S938]
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** [http://www.uniprot.org/uniprot/Q9S937 Q9S937]
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** [http://www.uniprot.org/uniprot/Q9PHM9 Q9PHM9]
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** [http://www.uniprot.org/uniprot/Q9UY24 Q9UY24]
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** [http://www.uniprot.org/uniprot/Q9JVG3 Q9JVG3]
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** [http://www.uniprot.org/uniprot/P47593 P47593]
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** [http://www.uniprot.org/uniprot/Q974Y8 Q974Y8]
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** [http://www.uniprot.org/uniprot/O05724 O05724]
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** [http://www.uniprot.org/uniprot/P19514 P19514]
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** [http://www.uniprot.org/uniprot/P00817 P00817]
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** [http://www.uniprot.org/uniprot/P0A7A9 P0A7A9]
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** [http://www.uniprot.org/uniprot/P13998 P13998]
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** [http://www.uniprot.org/uniprot/P19117 P19117]
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** [http://www.uniprot.org/uniprot/P21216 P21216]
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** [http://www.uniprot.org/uniprot/Q9R5T3 Q9R5T3]
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** [http://www.uniprot.org/uniprot/P37981 P37981]
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** [http://www.uniprot.org/uniprot/Q43801 Q43801]
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** [http://www.uniprot.org/uniprot/Q43798 Q43798]
 +
** [http://www.uniprot.org/uniprot/Q43797 Q43797]
 +
** [http://www.uniprot.org/uniprot/P50308 P50308]
 +
** [http://www.uniprot.org/uniprot/Q43796 Q43796]
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** [http://www.uniprot.org/uniprot/P93409 P93409]
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** [http://www.uniprot.org/uniprot/Q8H616 Q8H616]
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** [http://www.uniprot.org/uniprot/P93410 P93410]
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** [http://www.uniprot.org/uniprot/P75250 P75250]
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** [http://www.uniprot.org/uniprot/Q49071 Q49071]
 +
** [http://www.uniprot.org/uniprot/O48556 O48556]
 +
** [http://www.uniprot.org/uniprot/O22537 O22537]
 +
** [http://www.uniprot.org/uniprot/O82793 O82793]
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** [http://www.uniprot.org/uniprot/O23979 O23979]
 +
** [http://www.uniprot.org/uniprot/O49949 O49949]
 +
** [http://www.uniprot.org/uniprot/Q43187 Q43187]
 +
** [http://www.uniprot.org/uniprot/O22124 O22124]
 +
** [http://www.uniprot.org/uniprot/Q42650 Q42650]
 +
** [http://www.uniprot.org/uniprot/Q42651 Q42651]
 +
** [http://www.uniprot.org/uniprot/O65151 O65151]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Transmembrane_protein}}
 +
{{#set: common name=inorganic_pyrophosphatase}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=h+-translocating_pyrophosphatase}}
 +
{{#set: common name=Inorganic pyrophosphatase}}
 +
{{#set: common name=mitochondrial_carrier_protein}}
 +
{{#set: ec number=EC-3.6.1.1}}
 +
{{#set: gene associated=Tiso_gene_2850|Tiso_gene_6277|Tiso_gene_15874|Tiso_gene_16197|Tiso_gene_2851|Tiso_gene_17878|Tiso_gene_16375|Tiso_gene_9490|Tiso_gene_17879|Tiso_gene_7014|Tiso_gene_17889|Tiso_gene_1110}}
 +
{{#set: in pathway=PWY-7805|PWY-7807}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:08, 21 March 2018

Reaction INORGPYROPHOSPHAT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Transmembrane_protein
    • inorganic_pyrophosphatase
    • ORF
    • h+-translocating_pyrophosphatase
    • Inorganic pyrophosphatase
    • mitochondrial_carrier_protein
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 diphosphate[c] + 1 H2O[c] => 1 H+[c] + 2 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7805, aminomethylphosphonate degradation: PWY-7805
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-7807, glyphosate degradation III: PWY-7807
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=INORGPYROPHOSPHAT-RXN&oldid=46212"