Difference between revisions of "RXN-18208"

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(Created page with "Category:Gene == Gene Tiso_gene_12778 == * left end position: ** 62 * transcription direction: ** POSITIVE * right end position: ** 6172 * centisome position: ** 0.9228937...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18208 RXN-18208] == * direction: ** REVERSIBLE * common name: ** 3-isopropylmalate dehydrogenas...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
== Gene Tiso_gene_12778 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18208 RXN-18208] ==
* left end position:
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* direction:
** 62
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** REVERSIBLE
* transcription direction:
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* common name:
** POSITIVE
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** 3-isopropylmalate dehydrogenase
* right end position:
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** 6172
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* centisome position:
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** 0.92289376   
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* Synonym(s):
 
* Synonym(s):
  
== Reactions associated ==
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== Reaction Formula ==
* [[3-ISOPROPYLMALISOM-RXN]]
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* With identifiers:
** in-silico_annotation
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** 1 [[CPDQT-36]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[CPD-19491]][c] '''+''' 1 [[PROTON]][c]
***ec-number
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* With common name(s):
** experimental_annotation
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** 1 3-(3'-methylthio)propylmalate[c] '''+''' 1 NAD+[c] '''<=>''' 1 NADH[c] '''+''' 1 3-isopropyl-6-(methylthio)-2-oxohexanoate[c] '''+''' 1 H+[c]
***ec-number
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** [[pantograph]]-[[athaliana]]
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== Genes associated with this reaction  ==
** [[pantograph]]-[[esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
* [[HOMOACONITATE-HYDRATASE-RXN]]
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* Gene: [[Tiso_gene_2920]]
** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
* [[RXN-13163]]
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*** Assignment: EC-NUMBER
** in-silico_annotation
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== Pathways ==
***ec-number
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* [[PWYQT-4450]], aliphatic glucosinolate biosynthesis, side chain elongation cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4450 PWYQT-4450]
** experimental_annotation
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** '''10''' reactions found over '''30''' reactions in the full pathway
***ec-number
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== Reconstruction information  ==
* [[RXN-13722]]
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* Category: [[annotation]]
** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
* [[RXN-8991]]
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*** Tool: [[pathwaytools]]
** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways associated ==
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* [[PWY-3081]]
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* [[LYSINE-AMINOAD-PWY]]
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* [[P241-PWY]]
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* [[LEUSYN-PWY]]
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* [[PWY-6871]]
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== External links  ==
 
== External links  ==
{{#set: left end position=62}}
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{{#set: direction=REVERSIBLE}}
{{#set: transcription direction=POSITIVE}}
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{{#set: common name=3-isopropylmalate dehydrogenase}}
{{#set: right end position=6172}}
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{{#set: gene associated=Tiso_gene_2920}}
{{#set: centisome position=0.92289376    }}
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{{#set: in pathway=PWYQT-4450}}
{{#set: reaction associated=3-ISOPROPYLMALISOM-RXN|HOMOACONITATE-HYDRATASE-RXN|RXN-13163|RXN-13722|RXN-8991}}
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{{#set: reconstruction category=annotation}}
{{#set: pathway associated=PWY-3081|LYSINE-AMINOAD-PWY|P241-PWY|LEUSYN-PWY|PWY-6871}}
+
{{#set: reconstruction source=annotation-experimental_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 21:08, 21 March 2018

Reaction RXN-18208

  • direction:
    • REVERSIBLE
  • common name:
    • 3-isopropylmalate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-(3'-methylthio)propylmalate[c] + 1 NAD+[c] <=> 1 NADH[c] + 1 3-isopropyl-6-(methylthio)-2-oxohexanoate[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWYQT-4450, aliphatic glucosinolate biosynthesis, side chain elongation cycle: PWYQT-4450
    • 10 reactions found over 30 reactions in the full pathway

Reconstruction information

External links