Difference between revisions of "RXN-5462"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=NITRATE NITRATE] == * smiles: ** N(=O)(=O)[O-] * inchi key: ** InChIKey=NHNBFGGVMKEFGY-UHFFFAOY...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5462 RXN-5462] == * direction: ** LEFT-TO-RIGHT * common name: ** vacuolar_protein_sorting-asso...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=NITRATE NITRATE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5462 RXN-5462] ==
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* smiles:
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* direction:
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** N(=O)(=O)[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=NHNBFGGVMKEFGY-UHFFFAOYSA-N
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* common name:
 
* common name:
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** nitrate
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** vacuolar_protein_sorting-associated_protein_51_homolog
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* molecular weight:
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** ORF
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** 62.005   
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* ec number:
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** [http://enzyme.expasy.org/EC/2.4.1.132 EC-2.4.1.132]
 
* Synonym(s):
 
* Synonym(s):
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** NO3
 
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** NO3-
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[TransportSeed_NITRATE]]
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* With identifiers:
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* [[NITRATE-REDUCTASE-NADH-RXN]]
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** 1 [[GDP-MANNOSE]][c] '''+''' 1 [[ALPHA-D-MANNOSYLCHITOBIO]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[GDP]][c] '''+''' 1 [[CPD-5161]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[TransportSeed_NITRATE]]
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** 1 GDP-α-D-mannose[c] '''+''' 1 β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] '''=>''' 1 H+[c] '''+''' 1 GDP[c] '''+''' 1 α-D-Man-(1→3)-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c]
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* [[NODOy]]
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* [[NODOx]]
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== Genes associated with this reaction  ==
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== Reaction(s) of unknown directionality ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[ExchangeSeed_NITRATE]]
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* Gene: [[Tiso_gene_16872]]
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* [[NO3t]]
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** Source: [[annotation-in-silico_annotation]]
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* [[TCV3]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_10734]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
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** '''19''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 14797-55-8
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* RHEA:
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* Wikipedia : Nitrate
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29518 29518]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=943 943]
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** [http://www.genome.jp/dbget-bin/www_bget?R05973 R05973]
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* HMDB : HMDB02878
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** [http://www.genome.jp/dbget-bin/www_bget?R05002 R05002]
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* LIGAND-CPD:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00244 C00244]
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{{#set: common name=vacuolar_protein_sorting-associated_protein_51_homolog}}
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* CHEMSPIDER:
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{{#set: common name=ORF}}
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** [http://www.chemspider.com/Chemical-Structure.918.html 918]
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{{#set: ec number=EC-2.4.1.132}}
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* CHEBI:
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{{#set: gene associated=Tiso_gene_16872|Tiso_gene_10734}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=17632 17632]
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{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
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* BIGG : no3
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: smiles=N(=O)(=O)[O-]}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: inchi key=InChIKey=NHNBFGGVMKEFGY-UHFFFAOYSA-N}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: common name=nitrate}}
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{{#set: molecular weight=62.005    }}
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{{#set: common name=NO3|NO3-}}
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{{#set: consumed by=TransportSeed_NITRATE|NITRATE-REDUCTASE-NADH-RXN}}
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{{#set: produced by=TransportSeed_NITRATE|NODOy|NODOx}}
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{{#set: consumed or produced by=ExchangeSeed_NITRATE|NO3t|TCV3}}
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Latest revision as of 21:08, 21 March 2018

Reaction RXN-5462

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • vacuolar_protein_sorting-associated_protein_51_homolog
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 GDP-α-D-mannose[c] + 1 β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] => 1 H+[c] + 1 GDP[c] + 1 α-D-Man-(1→3)-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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