Difference between revisions of "RXN0-5021"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN490-3641 RXN490-3641] == * direction: ** LEFT-TO-RIGHT * common name: ** proline,2-oxoglutarate-...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5021 RXN0-5021] == * direction: ** REVERSIBLE * common name: ** dna_primase * ec number: ** [h...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN490-3641 RXN490-3641] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5021 RXN0-5021] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)
+
** dna_primase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
+
** [http://enzyme.expasy.org/EC/2.7.7 EC-2.7.7]
 
* Synonym(s):
 
* Synonym(s):
−
** prolyl hydroxylase
 
−
** prolyl 4-hydroxylase
 
−
** proline,2-oxoglutarate 4-dioxygenase
 
−
** proline hydroxylase
 
−
** protocollagen hydroxylase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PRO]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[4-HYDROXY-L-PROLINE]][c] '''+''' 1 [[SUC]][c]
+
** 1 [[Single-Stranded-DNAs]][c] '''<=>''' 1 [[Short-RNA-Fragments]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 L-proline[c] '''=>''' 1 CO2[c] '''+''' 1 trans-4-hydroxy-L-proline[c] '''+''' 1 succinate[c]
+
** 1 a single stranded DNA[c] '''<=>''' 1 a short RNA Segment[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18208]]
+
* Gene: [[Tiso_gene_4483]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_19638]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_18238]]
−
* [[Tiso_gene_15328]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_9035]]
+
* Gene: [[Tiso_gene_7005]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_2280]]
+
* Gene: [[Tiso_gene_7205]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_292]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_16842]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_18145]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17919]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_6296]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9636]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_8652]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_15594]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_3021]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13008]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_16122]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17823]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9165]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18689]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9455]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1468]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18933]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9227]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_2158]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17593]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9873]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18235]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[creinhardtii]]
+
*** Tool: [[pantograph]]
−
*** [[athaliana]]
+
* Category: [[annotation]]
−
*** [[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[manual]]:
+
*** Tool: [[pathwaytools]]
−
** [[primary_network]]
+
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01252 R01252]
+
{{#set: common name=dna_primase}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: ec number=EC-2.7.7}}
−
{{#set: common name=proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)}}
+
{{#set: gene associated=Tiso_gene_4483|Tiso_gene_18238|Tiso_gene_7005|Tiso_gene_7205}}
−
{{#set: ec number=EC-1.14.11}}
+
−
{{#set: common name=prolyl hydroxylase|prolyl 4-hydroxylase|proline,2-oxoglutarate 4-dioxygenase|proline hydroxylase|protocollagen hydroxylase}}
+
−
{{#set: gene associated=Tiso_gene_18208|Tiso_gene_19638|Tiso_gene_15328|Tiso_gene_9035|Tiso_gene_2280|Tiso_gene_292|Tiso_gene_16842|Tiso_gene_18145|Tiso_gene_17919|Tiso_gene_6296|Tiso_gene_9636|Tiso_gene_8652|Tiso_gene_15594|Tiso_gene_3021|Tiso_gene_13008|Tiso_gene_16122|Tiso_gene_17823|Tiso_gene_9165|Tiso_gene_18689|Tiso_gene_9455|Tiso_gene_1468|Tiso_gene_18933|Tiso_gene_9227|Tiso_gene_2158|Tiso_gene_17593|Tiso_gene_9873|Tiso_gene_18235}}
+
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+

Latest revision as of 20:08, 21 March 2018

Reaction RXN0-5021

  • direction:
    • REVERSIBLE
  • common name:
    • dna_primase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-5021&oldid=46271"