Difference between revisions of "CSm"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9518 RXN-9518] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-hydroxyhexanoyl-[acyl-carri...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CSm CSm] == * direction: ** LEFT-TO-RIGHT * common name: ** citrate synthase, mitochondrial * Synon...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9518 RXN-9518] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CSm CSm] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-hydroxyhexanoyl-[acyl-carrier protein] reductase
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** citrate synthase, mitochondrial
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** polyketide_synthase
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−
** 3-oxoacyl-(acyl-carrier-protein)
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−
* ec number:
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−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
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* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[3-oxo-hexanoyl-ACPs]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[R-3-hydroxyhexanoyl-ACPs]][c]
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** 1.0 [[WATER]][m] '''+''' 1.0 [[OXALACETIC_ACID]][m] '''+''' 1.0 [[ACETYL-COA]][m] '''=>''' 1.0 [[PROTON]][m] '''+''' 1.0 [[CO-A]][m] '''+''' 1.0 [[CIT]][m]
 
* With common name(s):
 
* With common name(s):
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** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 a 3-oxo-hexanoyl-[acp][c] '''=>''' 1 NADP+[c] '''+''' 1 a (3R)-3-hydroxyhexanoyl-[acp][c]
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** 1.0 H2O[m] '''+''' 1.0 oxaloacetate[m] '''+''' 1.0 acetyl-CoA[m] '''=>''' 1.0 H+[m] '''+''' 1.0 coenzyme A[m] '''+''' 1.0 citrate[m]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13083]]
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* Gene: [[Tiso_gene_18030]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-creinhardtii]]
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***EC-NUMBER
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−
** EXPERIMENTAL_ANNOTATION
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−
***EC-NUMBER
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_13394]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_500]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_10876]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
+
−
* [[Tiso_gene_136]]
+
−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
+
−
* [[Tiso_gene_9885]]
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−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
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−
* [[Tiso_gene_135]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[orthology-creinhardtii]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
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* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-hydroxyhexanoyl-[acyl-carrier protein] reductase}}
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{{#set: common name=citrate synthase, mitochondrial}}
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{{#set: common name=polyketide_synthase}}
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{{#set: gene associated=Tiso_gene_18030}}
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{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
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{{#set: in pathway=}}
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{{#set: ec number=EC-2.3.1.86}}
+
{{#set: reconstruction category=orthology}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: reconstruction source=orthology-creinhardtii}}
−
{{#set: ec number=EC-1.1.1.100}}
+
{{#set: reconstruction tool=pantograph}}
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{{#set: gene associated=Tiso_gene_13083|Tiso_gene_13394|Tiso_gene_500|Tiso_gene_10876|Tiso_gene_136|Tiso_gene_9885|Tiso_gene_135}}
+
−
{{#set: in pathway=PWY-5971|PWY-5994}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 21:08, 21 March 2018

Reaction CSm

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • citrate synthase, mitochondrial
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O[m] + 1.0 oxaloacetate[m] + 1.0 acetyl-CoA[m] => 1.0 H+[m] + 1.0 coenzyme A[m] + 1.0 citrate[m]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CSm&oldid=46274"