Difference between revisions of "RXN-14353"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALATE-DEH-RXN MALATE-DEH-RXN] == * direction: ** REVERSIBLE * common name: ** malate_dehydrogenase...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14353 RXN-14353] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidine_phosphorylase * e...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALATE-DEH-RXN MALATE-DEH-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14353 RXN-14353] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** malate_dehydrogenase_mitochondrial
+
** thymidine_phosphorylase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.37 EC-1.1.1.37]
+
** [http://enzyme.expasy.org/EC/2.4.1.1 EC-2.4.1.1]
 
* Synonym(s):
 
* Synonym(s):
−
** malate dehydrogenation
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[MAL]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[NADH]][c]
+
** 1 [[Soluble-Heteroglycans]][c] '''+''' 1 [[Pi]][c] '''=>''' 1 [[GLC-1-P]][c] '''+''' 1 [[Soluble-Heteroglycans]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (S)-malate[c] '''+''' 1 NAD+[c] '''<=>''' 1 H+[c] '''+''' 1 oxaloacetate[c] '''+''' 1 NADH[c]
+
** 1 a plant soluble heteroglycan[c] '''+''' 1 phosphate[c] '''=>''' 1 &alpha;-D-glucopyranose 1-phosphate[c] '''+''' 1 a plant soluble heteroglycan[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_2323]]
+
* Gene: [[Tiso_gene_1011]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-athaliana]]
 
−
** Source: [[orthology-athaliana]]
 
−
** Source: [[orthology-athaliana]]
 
−
** Source: [[orthology-athaliana]]
 
−
** Source: [[orthology-synechocystis]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
* Gene: [[Tiso_gene_1990]]
 
−
** Source: [[orthology-athaliana]]
 
−
** Source: [[orthology-athaliana]]
 
−
** Source: [[orthology-athaliana]]
 
−
** Source: [[orthology-athaliana]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
** Source: [[orthology-creinhardtii]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-561 PWY-561]
+
* [[PWY-7238]], sucrose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238]
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
** '''6''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
+
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
−
* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
+
−
** '''5''' reactions found over '''13''' reactions in the full pathway
+
−
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
+
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
−
* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
+
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383]
+
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
+
−
** '''5''' reactions found over '''12''' reactions in the full pathway
+
−
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
+
−
** '''7''' reactions found over '''10''' reactions in the full pathway
+
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
+
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
−
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
+
−
** '''7''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
+
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
−
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
+
−
** '''9''' reactions found over '''16''' reactions in the full pathway
+
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
+
−
** '''11''' reactions found over '''18''' reactions in the full pathway
+
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
+
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
−
* [[P108-PWY]], pyruvate fermentation to propanoate I: [http://metacyc.org/META/NEW-IMAGE?object=P108-PWY P108-PWY]
+
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
−
* [[MALATE-ASPARTATE-SHUTTLE-PWY]], L-aspartate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=MALATE-ASPARTATE-SHUTTLE-PWY MALATE-ASPARTATE-SHUTTLE-PWY]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
+
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
+
−
** '''9''' reactions found over '''12''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21432 21432]
+
{{#set: common name=thymidine_phosphorylase}}
−
* PIR:
+
{{#set: ec number=EC-2.4.1.1}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A32472 A32472]
+
{{#set: gene associated=Tiso_gene_1011}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49496 A49496]
+
{{#set: in pathway=PWY-7238}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A60689 A60689]
+
{{#set: reconstruction category=annotation}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64110 C64110]
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D81399 D81399]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEBYMC DEBYMC]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEBYMM DEBYMM]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEBYMP DEBYMP]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEEBM DEEBM]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEECM DEECM]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEMSMC DEMSMC]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEMSMM DEMSMM]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEPGMM DEPGMM]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEPUGW DEPUGW]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEPUMW DEPUMW]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DERTMM DERTMM]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DETWMA DETWMA]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F85551 F85551]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G01650 G01650]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64477 H64477]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40383 I40383]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PA0040 PA0040]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PA0079 PA0079]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PN0162 PN0162]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S03352 S03352]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S03958 S03958]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S04956 S04956]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S04957 S04957]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S04958 S04958]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S04959 S04959]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S04960 S04960]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S04961 S04961]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S07574 S07574]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S08981 S08981]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44167 S44167]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52039 S52039]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57958 S57958]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S61213 S61213]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S75735 S75735]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T03272 T03272]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06325 T06325]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06326 T06326]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06327 T06327]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06328 T06328]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06386 T06386]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08015 T08015]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08077 T08077]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08177 T08177]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09228 T09228]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09263 T09263]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09286 T09286]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09291 T09291]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09294 T09294]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T12433 T12433]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T18570 T18570]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45206 T45206]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45208 T45208]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T49932 T49932]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T51311 T51311]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T51862 T51862]
+
−
* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R00342 R00342]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q07841 Q07841]
+
−
** [http://www.uniprot.org/uniprot/P33163 P33163]
+
−
** [http://www.uniprot.org/uniprot/P44427 P44427]
+
−
** [http://www.uniprot.org/uniprot/Q9PHY2 Q9PHY2]
+
−
** [http://www.uniprot.org/uniprot/P22133 P22133]
+
−
** [http://www.uniprot.org/uniprot/P17505 P17505]
+
−
** [http://www.uniprot.org/uniprot/P32419 P32419]
+
−
** [http://www.uniprot.org/uniprot/P25077 P25077]
+
−
** [http://www.uniprot.org/uniprot/P14152 P14152]
+
−
** [http://www.uniprot.org/uniprot/Q8R1P0 Q8R1P0]
+
−
** [http://www.uniprot.org/uniprot/P19446 P19446]
+
−
** [http://www.uniprot.org/uniprot/P17783 P17783]
+
−
** [http://www.uniprot.org/uniprot/P04636 P04636]
+
−
** [http://www.uniprot.org/uniprot/P58408 P58408]
+
−
** [http://www.uniprot.org/uniprot/Q58820 Q58820]
+
−
** [http://www.uniprot.org/uniprot/P49814 P49814]
+
−
** [http://www.uniprot.org/uniprot/Q93ZA7 Q93ZA7]
+
−
** [http://www.uniprot.org/uniprot/Q7M4Y9 Q7M4Y9]
+
−
** [http://www.uniprot.org/uniprot/Q7M4Z0 Q7M4Z0]
+
−
** [http://www.uniprot.org/uniprot/P10887 P10887]
+
−
** [http://www.uniprot.org/uniprot/P11386 P11386]
+
−
** [http://www.uniprot.org/uniprot/P19983 P19983]
+
−
** [http://www.uniprot.org/uniprot/P19981 P19981]
+
−
** [http://www.uniprot.org/uniprot/P19979 P19979]
+
−
** [http://www.uniprot.org/uniprot/P19977 P19977]
+
−
** [http://www.uniprot.org/uniprot/P19982 P19982]
+
−
** [http://www.uniprot.org/uniprot/P19978 P19978]
+
−
** [http://www.uniprot.org/uniprot/P19980 P19980]
+
−
** [http://www.uniprot.org/uniprot/P16142 P16142]
+
−
** [http://www.uniprot.org/uniprot/P46487 P46487]
+
−
** [http://www.uniprot.org/uniprot/P46488 P46488]
+
−
** [http://www.uniprot.org/uniprot/Q43744 Q43744]
+
−
** [http://www.uniprot.org/uniprot/Q59202 Q59202]
+
−
** [http://www.uniprot.org/uniprot/Q55383 Q55383]
+
−
** [http://www.uniprot.org/uniprot/Q42972 Q42972]
+
−
** [http://www.uniprot.org/uniprot/O81278 O81278]
+
−
** [http://www.uniprot.org/uniprot/O81279 O81279]
+
−
** [http://www.uniprot.org/uniprot/O65363 O65363]
+
−
** [http://www.uniprot.org/uniprot/O65364 O65364]
+
−
** [http://www.uniprot.org/uniprot/O81609 O81609]
+
−
** [http://www.uniprot.org/uniprot/Q43743 Q43743]
+
−
** [http://www.uniprot.org/uniprot/Q42686 Q42686]
+
−
** [http://www.uniprot.org/uniprot/P93106 P93106]
+
−
** [http://www.uniprot.org/uniprot/Q04820 Q04820]
+
−
** [http://www.uniprot.org/uniprot/O48903 O48903]
+
−
** [http://www.uniprot.org/uniprot/O48904 O48904]
+
−
** [http://www.uniprot.org/uniprot/O48905 O48905]
+
−
** [http://www.uniprot.org/uniprot/O48906 O48906]
+
−
** [http://www.uniprot.org/uniprot/O24047 O24047]
+
−
** [http://www.uniprot.org/uniprot/Q9XTB4 Q9XTB4]
+
−
** [http://www.uniprot.org/uniprot/P50917 P50917]
+
−
** [http://www.uniprot.org/uniprot/Q49981 Q49981]
+
−
** [http://www.uniprot.org/uniprot/Q9ZP05 Q9ZP05]
+
−
** [http://www.uniprot.org/uniprot/Q9ZP06 Q9ZP06]
+
−
** [http://www.uniprot.org/uniprot/Q9SN86 Q9SN86]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=malate_dehydrogenase_mitochondrial}}
+
−
{{#set: ec number=EC-1.1.1.37}}
+
−
{{#set: common name=malate dehydrogenation}}
+
−
{{#set: gene associated=Tiso_gene_2323|Tiso_gene_1990}}
+
−
{{#set: in pathway=PWY-561|PWY-5913|PWY-1622|PWY66-399|P42-PWY|PWY-7383|PWY-5392|TCA|P105-PWY|P23-PWY|PWY-5690|GLYOXYLATE-BYPASS|FERMENTATION-PWY|PWY-6728|PWY-7115|GLUCONEO-PWY|P108-PWY|MALATE-ASPARTATE-SHUTTLE-PWY|PWY66-398|PWY-6969}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:08, 21 March 2018

Reaction RXN-14353

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • thymidine_phosphorylase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7238, sucrose biosynthesis II: PWY-7238
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-14353&oldid=46287"