Difference between revisions of "SARCOSINE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7609 RXN-7609] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_deoxy_cytosolic_type_c_prot...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SARCOSINE SARCOSINE] == * smiles: ** C[N+]CC(=O)[O-] * common name: ** sarcosine * inchi key: *...")
 
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7609 RXN-7609] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SARCOSINE SARCOSINE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C[N+]CC(=O)[O-]
 
* common name:
 
* common name:
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** 5_deoxy_cytosolic_type_c_protein
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** sarcosine
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** 5_-nucleotidase
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* inchi key:
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** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
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** InChIKey=FSYKKLYZXJSNPZ-UHFFFAOYSA-N
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** ORF
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* molecular weight:
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* ec number:
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** 89.094   
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** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
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* Synonym(s):
 
* Synonym(s):
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** N-methylglycine
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN66-577]]
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** 1 [[GMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GUANOSINE]][c] '''+''' 1 [[Pi]][c]
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* [[SARCOSINE-DEHYDROGENASE-RXN]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 GMP[c] '''+''' 1 H2O[c] '''=>''' 1 guanosine[c] '''+''' 1 phosphate[c]
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* [[DIMETHYLGLYCINE-DEHYDROGENASE-RXN]]
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* [[RXN66-576]]
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== Genes associated with this reaction  ==
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* [[CREATINASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) of unknown directionality ==
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* Gene: [[Tiso_gene_5911]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_13929]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_6640]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_9166]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_14435]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_14434]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6988]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_14246]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-6608]], guanosine nucleotides degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6608 PWY-6608]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6607]], guanosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6607 PWY-6607]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6606]], guanosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 107-97-1
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27714 27714]
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* BIGG : sarcs
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* LIGAND-RXN:
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* PUBCHEM:
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** [http://www.genome.jp/dbget-bin/www_bget?R01227 R01227]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=7311726 7311726]
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{{#set: direction=LEFT-TO-RIGHT}}
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* HMDB : HMDB00271
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{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
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* LIGAND-CPD:
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{{#set: common name=5_-nucleotidase}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00213 C00213]
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{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
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* CHEBI:
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{{#set: common name=ORF}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57433 57433]
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{{#set: ec number=EC-3.1.3.5}}
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* METABOLIGHTS : MTBLC57433
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{{#set: gene associated=Tiso_gene_5911|Tiso_gene_13929|Tiso_gene_6640|Tiso_gene_9166|Tiso_gene_14435|Tiso_gene_14434|Tiso_gene_6988|Tiso_gene_14246}}
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{{#set: smiles=C[N+]CC(=O)[O-]}}
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{{#set: in pathway=PWY-6608|PWY-6607|PWY-6606}}
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{{#set: common name=sarcosine}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: inchi key=InChIKey=FSYKKLYZXJSNPZ-UHFFFAOYSA-N}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: molecular weight=89.094    }}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: common name=N-methylglycine}}
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{{#set: consumed by=RXN66-577|SARCOSINE-DEHYDROGENASE-RXN}}
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{{#set: produced by=DIMETHYLGLYCINE-DEHYDROGENASE-RXN|RXN66-576|CREATINASE-RXN}}

Latest revision as of 20:08, 21 March 2018

Metabolite SARCOSINE

  • smiles:
    • C[N+]CC(=O)[O-]
  • common name:
    • sarcosine
  • inchi key:
    • InChIKey=FSYKKLYZXJSNPZ-UHFFFAOYSA-N
  • molecular weight:
    • 89.094
  • Synonym(s):
    • N-methylglycine

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 107-97-1
  • BIGG : sarcs
  • PUBCHEM:
  • HMDB : HMDB00271
  • LIGAND-CPD:
  • CHEBI:
  • METABOLIGHTS : MTBLC57433
"C[N+]CC(=O)[O-" cannot be used as a page name in this wiki.




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