Difference between revisions of "OROTPDECARB-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SARCOSINE SARCOSINE] == * smiles: ** C[N+]CC(=O)[O-] * inchi key: ** InChIKey=FSYKKLYZXJSNPZ-UH...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROTPDECARB-RXN OROTPDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.ex...")
 
(One intermediate revision by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SARCOSINE SARCOSINE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROTPDECARB-RXN OROTPDECARB-RXN] ==
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* smiles:
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* direction:
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** C[N+]CC(=O)[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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* ec number:
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** InChIKey=FSYKKLYZXJSNPZ-UHFFFAOYSA-N
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** [http://enzyme.expasy.org/EC/4.1.1.23 EC-4.1.1.23]
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* common name:
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** sarcosine
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* molecular weight:
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** 89.094   
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* Synonym(s):
 
* Synonym(s):
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** N-methylglycine
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN66-577]]
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* With identifiers:
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* [[SARCOSINE-DEHYDROGENASE-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[OROTIDINE-5-PHOSPHATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[UMP]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[DIMETHYLGLYCINE-DEHYDROGENASE-RXN]]
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** 1 H+[c] '''+''' 1 orotidine 5'-phosphate[c] '''=>''' 1 CO2[c] '''+''' 1 UMP[c]
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* [[RXN66-576]]
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* [[CREATINASE-RXN]]
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== Genes associated with this reaction  ==
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== Reaction(s) of unknown directionality ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_20050]]
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** Source: [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_18647]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 107-97-1
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* RHEA:
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* METABOLIGHTS : MTBLC57433
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11596 11596]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=7311726 7311726]
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** [http://www.genome.jp/dbget-bin/www_bget?R00965 R00965]
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* HMDB : HMDB00271
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P11172 P11172]
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** [http://www.genome.jp/dbget-bin/www_bget?C00213 C00213]
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** [http://www.uniprot.org/uniprot/Q9KQT7 Q9KQT7]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q9CFW9 Q9CFW9]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57433 57433]
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** [http://www.uniprot.org/uniprot/P24220 P24220]
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* BIGG : sarcs
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** [http://www.uniprot.org/uniprot/P0A5M7 P0A5M7]
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{{#set: smiles=C[N+]CC(=O)[O-]}}
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** [http://www.uniprot.org/uniprot/P43812 P43812]
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{{#set: inchi key=InChIKey=FSYKKLYZXJSNPZ-UHFFFAOYSA-N}}
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** [http://www.uniprot.org/uniprot/Q9PIC1 Q9PIC1]
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{{#set: common name=sarcosine}}
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** [http://www.uniprot.org/uniprot/P10652 P10652]
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{{#set: molecular weight=89.094    }}
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** [http://www.uniprot.org/uniprot/P07817 P07817]
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{{#set: common name=N-methylglycine}}
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** [http://www.uniprot.org/uniprot/P03962 P03962]
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{{#set: consumed by=RXN66-577|SARCOSINE-DEHYDROGENASE-RXN}}
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** [http://www.uniprot.org/uniprot/P14017 P14017]
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{{#set: produced by=DIMETHYLGLYCINE-DEHYDROGENASE-RXN|RXN66-576|CREATINASE-RXN}}
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** [http://www.uniprot.org/uniprot/P07691 P07691]
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** [http://www.uniprot.org/uniprot/P08244 P08244]
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** [http://www.uniprot.org/uniprot/P13439 P13439]
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** [http://www.uniprot.org/uniprot/P05035 P05035]
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** [http://www.uniprot.org/uniprot/P09463 P09463]
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** [http://www.uniprot.org/uniprot/P14964 P14964]
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** [http://www.uniprot.org/uniprot/P21593 P21593]
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** [http://www.uniprot.org/uniprot/P15188 P15188]
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** [http://www.uniprot.org/uniprot/P07922 P07922]
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** [http://www.uniprot.org/uniprot/P0A5M6 P0A5M6]
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** [http://www.uniprot.org/uniprot/Q9JV18 Q9JV18]
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** [http://www.uniprot.org/uniprot/P25971 P25971]
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** [http://www.uniprot.org/uniprot/P46535 P46535]
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** [http://www.uniprot.org/uniprot/P31754 P31754]
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** [http://www.uniprot.org/uniprot/P32430 P32430]
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** [http://www.uniprot.org/uniprot/Q01637 Q01637]
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** [http://www.uniprot.org/uniprot/P09556 P09556]
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** [http://www.uniprot.org/uniprot/P21594 P21594]
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** [http://www.uniprot.org/uniprot/Q06375 Q06375]
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** [http://www.uniprot.org/uniprot/P41769 P41769]
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** [http://www.uniprot.org/uniprot/Q18516 Q18516]
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** [http://www.uniprot.org/uniprot/Q59654 Q59654]
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** [http://www.uniprot.org/uniprot/Q42586 Q42586]
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** [http://www.uniprot.org/uniprot/P48844 P48844]
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** [http://www.uniprot.org/uniprot/P43230 P43230]
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** [http://www.uniprot.org/uniprot/Q42942 Q42942]
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** [http://www.uniprot.org/uniprot/O74110 O74110]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-4.1.1.23}}
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{{#set: gene associated=Tiso_gene_20050|Tiso_gene_18647}}
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{{#set: in pathway=PWY-7790|PWY-7791|PWY-5686}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus|manual-primary_network}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:09, 21 March 2018

Reaction OROTPDECARB-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7790, UMP biosynthesis II: PWY-7790
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III: PWY-7791
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5686, UMP biosynthesis I: PWY-5686
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=OROTPDECARB-RXN&oldid=46320"