Difference between revisions of "OCTAPRENYL-DIPHOSPHATE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9533 RXN-9533] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=OCTAPRENYL-DIPHOSPHATE OCTAPRENYL-DIPHOSPHATE] == * smiles: ** CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CC...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9533 RXN-9533] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=OCTAPRENYL-DIPHOSPHATE OCTAPRENYL-DIPHOSPHATE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCOP(=O)([O-])OP(=O)([O-])[O-]
 
* common name:
 
* common name:
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** polyketide_synthase
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** all-trans-octaprenyl diphosphate
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** InChIKey=IKKLDISSULFFQO-DJMILUHSSA-K
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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* molecular weight:
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** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
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** 719.897   
 
* Synonym(s):
 
* Synonym(s):
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** farnesylfarnesylgeranyl-PP
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** octaprenyl pyrophosphate
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** OPP
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** farnesylfarnesylgeraniol
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** octaprenyl diphosphate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[4OHBENZOATE-OCTAPRENYLTRANSFER-RXN]]
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** 1 [[R-3-hydroxydodecanoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Dodec-2-enoyl-ACPs]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 a (3R)-3-hydroxydodecanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a (2E)-dodec-2-enoyl-[acp][c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6884]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-7664]], oleate biosynthesis IV (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7664 PWY-7664]
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** '''10''' reactions found over '''14''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* LIGAND-CPD:
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{{#set: common name=polyketide_synthase}}
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** [http://www.genome.jp/dbget-bin/www_bget?C04146 C04146]
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{{#set: ec number=EC-2.3.1.86}}
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* HMDB : HMDB01094
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{{#set: ec number=EC-2.3.1.85}}
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* CHEBI:
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{{#set: ec number=EC-4.2.1.59}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57711 57711]
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{{#set: gene associated=Tiso_gene_135|Tiso_gene_136|Tiso_gene_13394|Tiso_gene_6884|Tiso_gene_500|Tiso_gene_10876}}
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* BIGG : octdp
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{{#set: in pathway=PWY-5994|PWY-5971|PWY-7664}}
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* PUBCHEM:
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{{#set: reconstruction category=manual|annotation}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25245331 25245331]
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
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{{#set: smiles=CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCOP(=O)([O-])OP(=O)([O-])[O-]}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: common name=all-trans-octaprenyl diphosphate}}
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{{#set: inchi key=InChIKey=IKKLDISSULFFQO-DJMILUHSSA-K}}
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{{#set: molecular weight=719.897    }}
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{{#set: common name=farnesylfarnesylgeranyl-PP|octaprenyl pyrophosphate|OPP|farnesylfarnesylgeraniol|octaprenyl diphosphate}}
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{{#set: consumed by=4OHBENZOATE-OCTAPRENYLTRANSFER-RXN}}

Latest revision as of 20:09, 21 March 2018

Metabolite OCTAPRENYL-DIPHOSPHATE

  • smiles:
    • CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCOP(=O)([O-])OP(=O)([O-])[O-]
  • common name:
    • all-trans-octaprenyl diphosphate
  • inchi key:
    • InChIKey=IKKLDISSULFFQO-DJMILUHSSA-K
  • molecular weight:
    • 719.897
  • Synonym(s):
    • farnesylfarnesylgeranyl-PP
    • octaprenyl pyrophosphate
    • OPP
    • farnesylfarnesylgeraniol
    • octaprenyl diphosphate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCOP(=O)([O-])OP(=O)([O-])[O-" cannot be used as a page name in this wiki.



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