Difference between revisions of "RXN-14274"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINSYNDEAM-RXN RIBOFLAVINSYNDEAM-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** rib...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14274 RXN-14274] == * direction: ** REVERSIBLE * common name: ** decanoyl-CoA C-acyltransferase...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINSYNDEAM-RXN RIBOFLAVINSYNDEAM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14274 RXN-14274] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** riboflavin_biosynthesis_protein
+
** decanoyl-CoA C-acyltransferase
 +
** acetyl-_c-acetyltransferase
 +
** 3-ketoacyl-_thiolase
 +
** thiolase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.5.4.26 EC-3.5.4.26]
+
** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-602]][c]
+
** 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-10267]][c] '''<=>''' 1 [[CPD0-2105]][c] '''+''' 1 [[CO-A]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one[c] '''+''' 1 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 5-amino-6-(5-phospho-D-ribosylamino)uracil[c]
+
** 1 acetyl-CoA[c] '''+''' 1 decanoyl-CoA[c] '''<=>''' 1 3-oxododecanoyl-CoA[c] '''+''' 1 coenzyme A[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1389]]
+
* Gene: [[Tiso_gene_3855]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_17451]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3856]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15327]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10116]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16181]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21868 21868]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31185 31185]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03459 R03459]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04742 R04742]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=riboflavin_biosynthesis_protein}}
+
{{#set: common name=decanoyl-CoA C-acyltransferase}}
−
{{#set: ec number=EC-3.5.4.26}}
+
{{#set: common name=acetyl-_c-acetyltransferase}}
−
{{#set: gene associated=Tiso_gene_1389}}
+
{{#set: common name=3-ketoacyl-_thiolase}}
−
{{#set: in pathway=RIBOSYN2-PWY}}
+
{{#set: common name=thiolase}}
 +
{{#set: ec number=EC-2.3.1.16}}
 +
{{#set: gene associated=Tiso_gene_3855|Tiso_gene_17451|Tiso_gene_3856|Tiso_gene_15327|Tiso_gene_10116|Tiso_gene_16181}}
 +
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:09, 21 March 2018

Reaction RXN-14274

  • direction:
    • REVERSIBLE
  • common name:
    • decanoyl-CoA C-acyltransferase
    • acetyl-_c-acetyltransferase
    • 3-ketoacyl-_thiolase
    • thiolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 acetyl-CoA[c] + 1 decanoyl-CoA[c] <=> 1 3-oxododecanoyl-CoA[c] + 1 coenzyme A[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-14274&oldid=46417"