Difference between revisions of "Tiso gene 777"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CDPREDUCT-RXN CDPREDUCT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ribonucleoside-diph...")
(Created page with "Category:Gene == Gene Tiso_gene_777 == * right end position: ** 26194 * transcription direction: ** NEGATIVE * left end position: ** 24009 * centisome position: ** 83.5560...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CDPREDUCT-RXN CDPREDUCT-RXN] ==
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== Gene Tiso_gene_777 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 26194
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* common name:
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* transcription direction:
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** ribonucleoside-diphosphate_reductase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
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** 24009
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* centisome position:
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** 83.55607   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[4-HYDROXYBUTYRATE-DEHYDROGENASE-RXN]]
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** 1 [[CDP]][c] '''+''' 1 [[Red-Thioredoxin]][c] '''=>''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[DCDP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 CDP[c] '''+''' 1 a reduced thioredoxin[c] '''=>''' 1 an oxidized thioredoxin[c] '''+''' 1 H2O[c] '''+''' 1 dCDP[c]
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* Reaction: [[GLYCLTD]]
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** Source: [[orthology-creinhardtii]]
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== Genes associated with this reaction  ==
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* Reaction: [[GLYCOLATE-REDUCTASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_10617]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_9916]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_9915]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10138]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
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** '''12''' reactions found over '''17''' reactions in the full pathway
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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* Reaction: [[GLYOXYLATE-REDUCTASE-NADP+-RXN]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-6903]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9952]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN0-5289]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-4321]]
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* [[GLUDEG-I-PWY]]
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* [[PWY-7295]]
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* [[OXIDATIVEPENT-PWY]]
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* [[PWY-7294]]
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* [[PWY-5022]]
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* [[PWY-6473]]
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* [[PWY-6535]]
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* [[PWY-5677]]
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* [[GLYCOLATEMET-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=26194}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28038 28038]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=24009}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02024 R02024]
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{{#set: centisome position=83.55607    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=4-HYDROXYBUTYRATE-DEHYDROGENASE-RXN|GLYCLTD|GLYCOLATE-REDUCTASE-RXN|GLYOXYLATE-REDUCTASE-NADP+-RXN|RXN-6903|RXN-9952|RXN0-5289|SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN}}
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{{#set: common name=ribonucleoside-diphosphate_reductase}}
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{{#set: pathway associated=PWY-4321|GLUDEG-I-PWY|PWY-7295|OXIDATIVEPENT-PWY|PWY-7294|PWY-5022|PWY-6473|PWY-6535|PWY-5677|GLYCOLATEMET-PWY}}
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{{#set: ec number=EC-1.17.4.1}}
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{{#set: gene associated=Tiso_gene_10617|Tiso_gene_9916|Tiso_gene_9915|Tiso_gene_10138}}
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{{#set: in pathway=PWY-7184|PWY-7198|PWY-6545|PWY0-166|PWY-7210}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 21:10, 21 March 2018

Gene Tiso_gene_777

  • right end position:
    • 26194
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 24009
  • centisome position:
    • 83.55607
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_777&oldid=46477"