Difference between revisions of "GLYCINE-AMINOTRANSFERASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYL-KIN-RXN ADENYL-KIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Adenylate kinase...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-AMINOTRANSFERASE-RXN GLYCINE-AMINOTRANSFERASE-RXN] == * direction: ** REVERSIBLE * ec numbe...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYL-KIN-RXN ADENYL-KIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-AMINOTRANSFERASE-RXN GLYCINE-AMINOTRANSFERASE-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* common name:
+
−
** Adenylate kinase (Fragment) n
+
−
** ORF
+
−
** adenylate_kinase
+
−
** adenylate_kinase_4
+
−
** central_pair_complex_1
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.4.3 EC-2.7.4.3]
+
** [http://enzyme.expasy.org/EC/2.6.1.4 EC-2.6.1.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[AMP]][c] '''+''' 1 [[ATP]][c] '''=>''' 2 [[ADP]][c]
+
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[GLY]][c] '''<=>''' 1 [[GLYOX]][c] '''+''' 1 [[GLT]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 AMP[c] '''+''' 1 ATP[c] '''=>''' 2 ADP[c]
+
** 1 2-oxoglutarate[c] '''+''' 1 glycine[c] '''<=>''' 1 glyoxylate[c] '''+''' 1 L-glutamate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_5837]]
+
* Gene: [[Tiso_gene_5959]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_20557]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_1695]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[orthology-creinhardtii]]
−
* [[Tiso_gene_5081]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13477]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1453]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_5388]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_19036]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_5387]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_5839]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_12256]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_4816]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_14116]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_805]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_3353]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_19734]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_694]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_8576]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_12257]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219]
+
* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-creinhardtii]]
−
*** [[creinhardtii]]
+
*** Tool: [[pantograph]]
−
*** [[synechocystis]]
+
−
*** [[esiliculosus]]
+
−
*** [[athaliana]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12973 12973]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14089 14089]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00127 R00127]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00372 R00372]
−
* UNIPROT:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/P05081 P05081]
+
{{#set: ec number=EC-2.6.1.4}}
−
** [http://www.uniprot.org/uniprot/P20425 P20425]
+
{{#set: gene associated=Tiso_gene_5959|Tiso_gene_20557|Tiso_gene_1695}}
−
** [http://www.uniprot.org/uniprot/P08166 P08166]
+
{{#set: in pathway=PWY-181}}
−
** [http://www.uniprot.org/uniprot/P38372 P38372]
+
−
** [http://www.uniprot.org/uniprot/O27699 O27699]
+
−
** [http://www.uniprot.org/uniprot/O29581 O29581]
+
−
** [http://www.uniprot.org/uniprot/O59443 O59443]
+
−
** [http://www.uniprot.org/uniprot/Q9YDD2 Q9YDD2]
+
−
** [http://www.uniprot.org/uniprot/Q9UZN1 Q9UZN1]
+
−
** [http://www.uniprot.org/uniprot/P58117 P58117]
+
−
** [http://www.uniprot.org/uniprot/Q9PHM8 Q9PHM8]
+
−
** [http://www.uniprot.org/uniprot/P54819 P54819]
+
−
** [http://www.uniprot.org/uniprot/O66490 O66490]
+
−
** [http://www.uniprot.org/uniprot/Q9V1V9 Q9V1V9]
+
−
** [http://www.uniprot.org/uniprot/P49973 P49973]
+
−
** [http://www.uniprot.org/uniprot/P24323 P24323]
+
−
** [http://www.uniprot.org/uniprot/P47417 P47417]
+
−
** [http://www.uniprot.org/uniprot/Q9HPA7 Q9HPA7]
+
−
** [http://www.uniprot.org/uniprot/P29410 P29410]
+
−
** [http://www.uniprot.org/uniprot/P16304 P16304]
+
−
** [http://www.uniprot.org/uniprot/P00570 P00570]
+
−
** [http://www.uniprot.org/uniprot/P27142 P27142]
+
−
** [http://www.uniprot.org/uniprot/P07170 P07170]
+
−
** [http://www.uniprot.org/uniprot/P12115 P12115]
+
−
** [http://www.uniprot.org/uniprot/P69441 P69441]
+
−
** [http://www.uniprot.org/uniprot/P00568 P00568]
+
−
** [http://www.uniprot.org/uniprot/P10772 P10772]
+
−
** [http://www.uniprot.org/uniprot/P00571 P00571]
+
−
** [http://www.uniprot.org/uniprot/P00569 P00569]
+
−
** [http://www.uniprot.org/uniprot/P10251 P10251]
+
−
** [http://www.uniprot.org/uniprot/P43417 P43417]
+
−
** [http://www.uniprot.org/uniprot/P49974 P49974]
+
−
** [http://www.uniprot.org/uniprot/P33107 P33107]
+
−
** [http://www.uniprot.org/uniprot/P27143 P27143]
+
−
** [http://www.uniprot.org/uniprot/P26364 P26364]
+
−
** [http://www.uniprot.org/uniprot/P33075 P33075]
+
−
** [http://www.uniprot.org/uniprot/P35140 P35140]
+
−
** [http://www.uniprot.org/uniprot/P35141 P35141]
+
−
** [http://www.uniprot.org/uniprot/P39068 P39068]
+
−
** [http://www.uniprot.org/uniprot/P34346 P34346]
+
−
** [http://www.uniprot.org/uniprot/P43188 P43188]
+
−
** [http://www.uniprot.org/uniprot/P69344 P69344]
+
−
** [http://www.uniprot.org/uniprot/P0A0U6 P0A0U6]
+
−
** [http://www.uniprot.org/uniprot/P49979 P49979]
+
−
** [http://www.uniprot.org/uniprot/Q50299 Q50299]
+
−
** [http://www.uniprot.org/uniprot/P43412 P43412]
+
−
** [http://www.uniprot.org/uniprot/P72641 P72641]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=Adenylate kinase (Fragment) n}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: common name=adenylate_kinase}}
+
−
{{#set: common name=adenylate_kinase_4}}
+
−
{{#set: common name=central_pair_complex_1}}
+
−
{{#set: ec number=EC-2.7.4.3}}
+
−
{{#set: gene associated=Tiso_gene_5837|Tiso_gene_5081|Tiso_gene_13477|Tiso_gene_1453|Tiso_gene_5388|Tiso_gene_19036|Tiso_gene_5387|Tiso_gene_5839|Tiso_gene_12256|Tiso_gene_4816|Tiso_gene_14116|Tiso_gene_805|Tiso_gene_3353|Tiso_gene_19734|Tiso_gene_694|Tiso_gene_8576|Tiso_gene_12257}}
+
−
{{#set: in pathway=PWY-7219}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-creinhardtii}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
 
−
{{#set: reconstruction category=manual}}
 
−
{{#set: reconstruction source=primary_network}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 21:10, 21 March 2018

Reaction GLYCINE-AMINOTRANSFERASE-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2-oxoglutarate[c] + 1 glycine[c] <=> 1 glyoxylate[c] + 1 L-glutamate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-181, photorespiration: PWY-181
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=GLYCINE-AMINOTRANSFERASE-RXN&oldid=46504"