Difference between revisions of "PGPPHOSPHA-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=C1 C1] == * smiles: ** CC(C(=O)NC(C)C([O-])=O)NC(=O)C(CCCC([N+])C(=O)[O-])NC(=O)CCC(C(=O)[O-])N...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGPPHOSPHA-RXN PGPPHOSPHA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** protein-tyrosine_...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=C1 C1] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGPPHOSPHA-RXN PGPPHOSPHA-RXN] ==
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* smiles:
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* direction:
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** CC(C(=O)NC(C)C([O-])=O)NC(=O)C(CCCC([N+])C(=O)[O-])NC(=O)CCC(C(=O)[O-])NC(=O)C(C)NC(=O)C(C)OC1(C(O)C(CO)OC(C(NC(=O)C)1)OP([O-])(OP([O-])(OCC2(C(O)C(O)C(O2)N3(C=CC(=O)NC(=O)3)))=O)=O)
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
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** protein-tyrosine_phosphatase_mitochondrial_1
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* inchi key:
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* ec number:
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** InChIKey=IMWOXEZVYQDRDF-MCZXNMLPSA-J
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** [http://enzyme.expasy.org/EC/3.1.3.27 EC-3.1.3.27]
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* molecular weight:
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** 1189.924   
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* Synonym(s):
 
* Synonym(s):
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** UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
 
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** UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminoheptanedioate- D-alanyl-D-alanine
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[PHOSNACMURPENTATRANS-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[L-1-PHOSPHATIDYL-GLYCEROL-P]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[L-1-PHOSPHATIDYL-GLYCEROL]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 1-(3-sn-phosphatidyl)-sn-glycerol 3-phosphate[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 an L-1-phosphatidyl-sn-glycerol[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_18092]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY4FS-7]], phosphatidylglycerol biosynthesis I (plastidic): [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-7 PWY4FS-7]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY4FS-8]], phosphatidylglycerol biosynthesis II (non-plastidic): [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-8 PWY4FS-8]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5269]], cardiolipin biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5269 PWY-5269]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7817 PWY-7817]
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** '''7''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-5668]], cardiolipin biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5668 PWY-5668]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY0-1545]], cardiolipin biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1545 PWY0-1545]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25244658 25244658]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16725 16725]
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* CHEBI:
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* LIGAND-RXN:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=61386 61386]
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** [http://www.genome.jp/dbget-bin/www_bget?R02029 R02029]
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* BIGG : ugmda
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P18200 P18200]
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** [http://www.genome.jp/dbget-bin/www_bget?C04882 C04882]
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** [http://www.uniprot.org/uniprot/Q9JRA8 Q9JRA8]
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{{#set: smiles=CC(C(=O)NC(C)C([O-])=O)NC(=O)C(CCCC([N+])C(=O)[O-])NC(=O)CCC(C(=O)[O-])NC(=O)C(C)NC(=O)C(C)OC1(C(O)C(CO)OC(C(NC(=O)C)1)OP([O-])(OP([O-])(OCC2(C(O)C(O)C(O2)N3(C=CC(=O)NC(=O)3)))=O)=O)}}
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** [http://www.uniprot.org/uniprot/Q9PM65 Q9PM65]
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{{#set: common name=UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine}}
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** [http://www.uniprot.org/uniprot/P0A924 P0A924]
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{{#set: inchi key=InChIKey=IMWOXEZVYQDRDF-MCZXNMLPSA-J}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: molecular weight=1189.924    }}
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{{#set: common name=protein-tyrosine_phosphatase_mitochondrial_1}}
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{{#set: common name=UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine|UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminoheptanedioate- D-alanyl-D-alanine}}
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{{#set: ec number=EC-3.1.3.27}}
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{{#set: consumed by=PHOSNACMURPENTATRANS-RXN}}
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{{#set: gene associated=Tiso_gene_18092}}
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{{#set: in pathway=PWY4FS-7|PWY4FS-8|PWY-5269|PWY-7817|PWY-5668|PWY0-1545}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 21:10, 21 March 2018

Reaction PGPPHOSPHA-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • protein-tyrosine_phosphatase_mitochondrial_1
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY4FS-7, phosphatidylglycerol biosynthesis I (plastidic): PWY4FS-7
    • 3 reactions found over 4 reactions in the full pathway
  • PWY4FS-8, phosphatidylglycerol biosynthesis II (non-plastidic): PWY4FS-8
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5269, cardiolipin biosynthesis II: PWY-5269
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7817, type I lipoteichoic acid biosynthesis (S. aureus): PWY-7817
    • 7 reactions found over 16 reactions in the full pathway
  • PWY-5668, cardiolipin biosynthesis I: PWY-5668
    • 2 reactions found over 3 reactions in the full pathway
  • PWY0-1545, cardiolipin biosynthesis III: PWY0-1545
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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