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| Line 1: |
Line 1: |
| − | [[Category:Reaction]] | + | [[Category:Gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTSEMIALDEHYDROG-RXN GLUTSEMIALDEHYDROG-RXN] == | + | == Gene Tiso_gene_10922 == |
| − | * direction: | + | * right end position: |
| − | ** LEFT-TO-RIGHT | + | ** 1783 |
| − | * common name: | + | * transcription direction: |
| − | ** glutamate-5-semialdehyde_dehydrogenase | + | ** POSITIVE |
| − | * ec number: | + | * left end position: |
| − | ** [http://enzyme.expasy.org/EC/1.2.1.41 EC-1.2.1.41] | + | ** 402 |
| | + | * centisome position: |
| | + | ** 3.7910223 |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reactions associated == |
| − | * With identifiers: | + | * Reaction: [[1.13.11.6-RXN]] |
| − | ** 1 [[L-GLUTAMATE-5-P]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c]
| + | ** Source: [[annotation-experimental_annotation]] |
| − | * With common name(s):
| + | *** Assignment: ec-number |
| − | ** 1 γ-L-glutamyl 5-phosphate[c] '''+''' 1 H+[c] '''+''' 1 NADPH[c] '''=>''' 1 NADP+[c] '''+''' 1 phosphate[c] '''+''' 1 L-glutamate-5-semialdehyde[c]
| + | == Pathways associated == |
| − | | + | * [[PWY-5651]] |
| − | == Genes associated with this reaction ==
| + | * [[PWY-6505]] |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | * [[PWY-6309]] |
| − | * Gene: [[Tiso_gene_16634]]
| + | * [[PWY-5647]] |
| − | ** Source: [[orthology-athaliana]]
| + | |
| − | ** Source: [[orthology-synechocystis]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | ** Source: [[orthology-creinhardtii]]
| + | |
| − | * Gene: [[Tiso_gene_16258]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]] | + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH | + | |
| − | == Pathways == | + | |
| − | * [[PWY-6922]], L-Nδ-acetylornithine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922] | + | |
| − | ** '''6''' reactions found over '''7''' reactions in the full pathway
| + | |
| − | * [[PROSYN-PWY]], L-proline biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PROSYN-PWY PROSYN-PWY] | + | |
| − | ** '''4''' reactions found over '''4''' reactions in the full pathway
| + | |
| − | * [[PWY-3341]], L-proline biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3341 PWY-3341] | + | |
| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
| + | |
| − | * [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=ARGININE-SYN4-PWY ARGININE-SYN4-PWY] | + | |
| − | ** '''3''' reactions found over '''4''' reactions in the full pathway
| + | |
| − | * [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
| + | |
| − | ** '''8''' reactions found over '''8''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[orthology]]
| + | |
| − | ** Source: [[orthology-athaliana]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-creinhardtii]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-synechocystis]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | * Category: [[manual]]
| + | |
| − | ** Source: [[manual-primary_network]]
| + | |
| − | * Category: [[annotation]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: right end position=1783}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19541 19541]
| + | {{#set: transcription direction=POSITIVE}} |
| − | * LIGAND-RXN:
| + | {{#set: left end position=402}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R03313 R03313]
| + | {{#set: centisome position=3.7910223 }} |
| − | * UNIPROT:
| + | {{#set: reaction associated=1.13.11.6-RXN}} |
| − | ** [http://www.uniprot.org/uniprot/Q9JUK8 Q9JUK8]
| + | {{#set: pathway associated=PWY-5651|PWY-6505|PWY-6309|PWY-5647}} |
| − | ** [http://www.uniprot.org/uniprot/P45121 P45121]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P53000 P53000]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P07004 P07004]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P17857 P17857]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P45638 P45638]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P54885 P54885]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O04226 O04226]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | |
| − | {{#set: common name=glutamate-5-semialdehyde_dehydrogenase}} | + | |
| − | {{#set: ec number=EC-1.2.1.41}} | + | |
| − | {{#set: gene associated=Tiso_gene_16634|Tiso_gene_16258}} | + | |
| − | {{#set: in pathway=PWY-6922|PROSYN-PWY|PWY-3341|ARGININE-SYN4-PWY|CITRULBIO-PWY}} | + | |
| − | {{#set: reconstruction category=orthology|manual|annotation}}
| + | |
| − | {{#set: reconstruction source=orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
| + | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| + | |
