Difference between revisions of "RXN-17918"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=O-SUCCHOMOSERLYASE-RXN O-SUCCHOMOSERLYASE-RXN] == * direction: ** REVERSIBLE * ec number: ** [http:...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17918 RXN-17918] == * direction: ** LEFT-TO-RIGHT * common name: ** dna_ligase_mrna_capping_enz...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=O-SUCCHOMOSERLYASE-RXN O-SUCCHOMOSERLYASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17918 RXN-17918] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* ec number:
+
* common name:
−
** [http://enzyme.expasy.org/EC/2.5.1.48 EC-2.5.1.48]
+
** dna_ligase_mrna_capping_enzyme
 +
** dna_ligase
 +
** ORF
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[O-SUCCINYL-L-HOMOSERINE]][c] '''+''' 1 [[CYS]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[SUC]][c]
+
** 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[DNA-Ligase-L-lysine-adenylate]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[A-5-prime-PP-5-prime-DNA]][c] '''+''' 1 [[DNA-Ligase-L-lysine]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 O-succinyl-L-homoserine[c] '''+''' 1 L-cysteine[c] '''<=>''' 1 H+[c] '''+''' 1 L-cystathionine[c] '''+''' 1 succinate[c]
+
** 1 a 5'-phospho-[DNA][c] '''+''' 1 a [DNA ligase]-N6-(5'-adenylyl)-L-lysine[c] '''+''' 2 H+[c] '''=>''' 1 a 5'-(5'-diphosphoadenosine)-[DNA][c] '''+''' 1 a [DNA ligase]-L-lysine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_3732]]
+
* Gene: [[Tiso_gene_11251]]
−
** Source: [[orthology-athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** Source: [[orthology-esiliculosus]]
+
*** Assignment: EC-NUMBER
−
** Source: [[orthology-creinhardtii]]
+
* Gene: [[Tiso_gene_14249]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14250]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12142]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6743]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3498]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-I9]], L-cysteine biosynthesis VI (from L-methionine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-I9 PWY-I9]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-METSYN-PWY HOMOSER-METSYN-PWY]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[annotation]]
−
** Source: [[orthology-athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[pathwaytools]]
−
** Source: [[orthology-creinhardtii]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20397 20397]
+
{{#set: common name=dna_ligase_mrna_capping_enzyme}}
−
* LIGAND-RXN:
+
{{#set: common name=dna_ligase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03260 R03260]
+
{{#set: common name=ORF}}
−
* UNIPROT:
+
{{#set: gene associated=Tiso_gene_11251|Tiso_gene_14249|Tiso_gene_14250|Tiso_gene_12142|Tiso_gene_6743|Tiso_gene_3498}}
−
** [http://www.uniprot.org/uniprot/P0A4K2 P0A4K2]
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/Q9CEC6 Q9CEC6]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P38675 P38675]
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
** [http://www.uniprot.org/uniprot/P24601 P24601]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P00935 P00935]
+
−
** [http://www.uniprot.org/uniprot/O04981 O04981]
+
−
** [http://www.uniprot.org/uniprot/O04982 O04982]
+
−
** [http://www.uniprot.org/uniprot/O81334 O81334]
+
−
** [http://www.uniprot.org/uniprot/Q79VD9 Q79VD9]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: ec number=EC-2.5.1.48}}
+
−
{{#set: gene associated=Tiso_gene_3732}}
+
−
{{#set: in pathway=PWY-I9|HOMOSER-METSYN-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 21:10, 21 March 2018

Reaction RXN-17918

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • dna_ligase_mrna_capping_enzyme
    • dna_ligase
    • ORF
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-17918&oldid=46550"