Difference between revisions of "RXN-5841"

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(Created page with "Category:Gene == Gene Tiso_gene_17963 == * left end position: ** 336 * transcription direction: ** POSITIVE * right end position: ** 1530 * centisome position: ** 10.04484...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5841 RXN-5841] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_-nucleotidase ** 5_deoxy_cy...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_17963 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5841 RXN-5841] ==
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* left end position:
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* direction:
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** 336
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** 5_-nucleotidase
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* right end position:
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** 5_deoxy_cytosolic_type_c_protein
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** 1530
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** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
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* centisome position:
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** ORF
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** 10.044843   
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[TRNA-GUANINE-N7--METHYLTRANSFERASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[NICOTINAMIDE_NUCLEOTIDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NICOTINAMIDE_RIBOSE]][c] '''+''' 1 [[Pi]][c]
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***ec-number
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* With common name(s):
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** [[pantograph]]-[[esiliculosus]]
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** 1 β-nicotinamide D-ribonucleotide[c] '''+''' 1 H2O[c] '''=>''' 1 1-(β-D ribofuranosyl)nicotinamide[c] '''+''' 1 phosphate[c]
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== Pathways associated ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_5911]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_6988]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_13929]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_14434]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_14246]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6640]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_14435]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways ==
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* [[PWY-5381]], pyridine nucleotide cycling (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5381 PWY-5381]
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** '''3''' reactions found over '''11''' reactions in the full pathway
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* [[NAD-BIOSYNTHESIS-II]], NAD salvage pathway III: [http://metacyc.org/META/NEW-IMAGE?object=NAD-BIOSYNTHESIS-II NAD-BIOSYNTHESIS-II]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=336}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30815 30815]
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{{#set: right end position=1530}}
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* LIGAND-RXN:
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{{#set: centisome position=10.044843    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R02323 R02323]
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{{#set: reaction associated=TRNA-GUANINE-N7--METHYLTRANSFERASE-RXN}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=5_-nucleotidase}}
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{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
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{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-3.1.3.5}}
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{{#set: gene associated=Tiso_gene_5911|Tiso_gene_6988|Tiso_gene_13929|Tiso_gene_14434|Tiso_gene_14246|Tiso_gene_6640|Tiso_gene_14435}}
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{{#set: in pathway=PWY-5381|NAD-BIOSYNTHESIS-II}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:11, 21 March 2018

Reaction RXN-5841

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5_-nucleotidase
    • 5_deoxy_cytosolic_type_c_protein
    • probable_cytosolic_imp-gmp_specific_5_-nucleotidase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-5841&oldid=46606"