Difference between revisions of "KDOTRANS-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_8720 == * left end position: ** 62 * transcription direction: ** POSITIVE * right end position: ** 2159 * centisome position: ** 0.6227401...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDOTRANS-RXN KDOTRANS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-deoxy-d-manno-octul...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_8720 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDOTRANS-RXN KDOTRANS-RXN] ==
−
* left end position:
+
* direction:
−
** 62
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** 3-deoxy-d-manno-octulosonic-acid_transferase
−
* right end position:
+
* ec number:
−
** 2159
+
** [http://enzyme.expasy.org/EC/2.4.99.12 EC-2.4.99.12]
−
* centisome position:
+
−
** 0.6227401   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[2PGADEHYDRAT-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[LIPID-IV-A]][c] '''+''' 1 [[CMP-KDO]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[KDO-LIPID-IVA]][c] '''+''' 1 [[CMP]][c]
−
***ec-number
+
* With common name(s):
−
** experimental_annotation
+
** 1 lipid IVA[c] '''+''' 1 CMP-3-deoxy-β-D-manno-octulosonate[c] '''=>''' 1 H+[c] '''+''' 1 α-Kdo-(2→6)-lipid IVA[c] '''+''' 1 CMP[c]
−
***ec-number
+
 
−
** [[pantograph]]-[[athaliana]]
+
== Genes associated with this reaction  ==
−
** [[pantograph]]-[[athaliana]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** [[pantograph]]-[[synechocystis]]
+
* Gene: [[Tiso_gene_14463]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[orthology-athaliana]]
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_14462]]
−
* [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[athaliana]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[esiliculosus]]
+
== Pathways  ==
−
== Pathways associated ==
+
* [[KDOSYN-PWY]], Kdo transfer to lipid IVA I: [http://metacyc.org/META/NEW-IMAGE?object=KDOSYN-PWY KDOSYN-PWY]
−
* [[GLYCOLYSIS]]
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6901]]
+
* [[PWY-7675]], Kdo transfer to lipid IVA II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7675 PWY-7675]
−
* [[P124-PWY]]
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6142]]
+
== Reconstruction information  ==
−
* [[P341-PWY]]
+
* Category: [[orthology]]
−
* [[PWY-1622]]
+
** Source: [[orthology-athaliana]]
−
* [[GLUCONEO-PWY]]
+
*** Tool: [[pantograph]]
−
* [[PWY-6886]]
+
* Category: [[annotation]]
−
* [[PWY66-399]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[PWY-1042]]
+
*** Tool: [[pathwaytools]]
−
* [[NPGLUCAT-PWY]]
+
−
* [[PWY-5723]]
+
−
* [[ANAGLYCOLYSIS-PWY]]
+
−
* [[PWY-5484]]
+
−
* [[PWY-7124]]
+
−
* [[PWY-7003]]
+
−
* [[PWY-2221]]
+
−
* [[PWY-6416]]
+
−
* [[PWY-6163]]
+
−
* [[PWY-7218]]
+
−
* [[QUINATEDEG-PWY]]
+
−
* [[P122-PWY]]
+
−
* [[PWY-6707]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=62}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28066 28066]
−
{{#set: right end position=2159}}
+
* LIGAND-RXN:
−
{{#set: centisome position=0.6227401    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R04658 R04658]
−
{{#set: reaction associated=2PGADEHYDRAT-RXN|3-DEHYDROQUINATE-DEHYDRATASE-RXN}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: pathway associated=GLYCOLYSIS|PWY-6901|P124-PWY|PWY-6142|P341-PWY|PWY-1622|GLUCONEO-PWY|PWY-6886|PWY66-399|PWY-1042|NPGLUCAT-PWY|PWY-5723|ANAGLYCOLYSIS-PWY|PWY-5484|PWY-7124|PWY-7003|PWY-2221|PWY-6416|PWY-6163|PWY-7218|QUINATEDEG-PWY|P122-PWY|PWY-6707}}
+
{{#set: common name=3-deoxy-d-manno-octulosonic-acid_transferase}}
 +
{{#set: ec number=EC-2.4.99.12}}
 +
{{#set: gene associated=Tiso_gene_14463|Tiso_gene_14462}}
 +
{{#set: in pathway=KDOSYN-PWY|PWY-7675}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:11, 21 March 2018

Reaction KDOTRANS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-deoxy-d-manno-octulosonic-acid_transferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 lipid IVA[c] + 1 CMP-3-deoxy-β-D-manno-octulosonate[c] => 1 H+[c] + 1 α-Kdo-(2→6)-lipid IVA[c] + 1 CMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • KDOSYN-PWY, Kdo transfer to lipid IVA I: KDOSYN-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7675, Kdo transfer to lipid IVA II: PWY-7675
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=KDOTRANS-RXN&oldid=46657"