Difference between revisions of "RXN0-5398"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-4113 RXN3O-4113] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** OR...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5398 RXN0-5398] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/4.2...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-4113 RXN3O-4113] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5398 RXN0-5398] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* common name:
+
−
** polyketide_synthase
+
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.1 EC-1.1.1.1]
+
** [http://enzyme.expasy.org/EC/4.2.1.70 EC-4.2.1.70]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[HYDRPHENYLAC-CPD]][c] '''+''' 1 [[NADH]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[CPD3O-4151]][c]
+
** 1 [[URACIL]][c] '''+''' 1 [[CPD-15317]][c] '''<=>''' 1 [[PSEUDOURIDINE-5-P]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 (4-hydroxyphenyl)acetaldehyde[c] '''+''' 1 NADH[c] '''=>''' 1 NAD+[c] '''+''' 1 4-tyrosol[c]
+
** 1 uracil[c] '''+''' 1 D-ribofuranose 5-phosphate[c] '''<=>''' 1 pseudouridine 5'-phosphate[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_7649]]
+
* Gene: [[Tiso_gene_6094]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
−
* [[Tiso_gene_6563]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5424]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5425]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6562]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY3O-4108]], L-tyrosine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-4108 PWY3O-4108]
+
* [[PWY-6019]], pseudouridine degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6019 PWY-6019]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6802]], salidroside biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6802 PWY-6802]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18337 18337]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04304 R04304]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01055 R01055]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* UNIPROT:
−
{{#set: common name=polyketide_synthase}}
+
** [http://www.uniprot.org/uniprot/Q9JWF1 Q9JWF1]
−
{{#set: common name=ORF}}
+
** [http://www.uniprot.org/uniprot/Q9JTX5 Q9JTX5]
−
{{#set: ec number=EC-1.1.1.1}}
+
** [http://www.uniprot.org/uniprot/Q9PPJ9 Q9PPJ9]
−
{{#set: gene associated=Tiso_gene_7649|Tiso_gene_6563|Tiso_gene_5424|Tiso_gene_5425|Tiso_gene_6562}}
+
** [http://www.uniprot.org/uniprot/Q9CGH0 Q9CGH0]
−
{{#set: in pathway=PWY3O-4108|PWY-6802}}
+
** [http://www.uniprot.org/uniprot/Q9CI80 Q9CI80]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q9JX44 Q9JX44]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q9V1A5 Q9V1A5]
−
{{#set: reconstruction source=in-silico_annotation}}
+
** [http://www.uniprot.org/uniprot/Q9PP96 Q9PP96]
 +
** [http://www.uniprot.org/uniprot/Q9PN18 Q9PN18]
 +
** [http://www.uniprot.org/uniprot/Q9PJ89 Q9PJ89]
 +
** [http://www.uniprot.org/uniprot/Q9PNJ2 Q9PNJ2]
 +
** [http://www.uniprot.org/uniprot/Q9PLW9 Q9PLW9]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-4.2.1.70}}
 +
{{#set: gene associated=Tiso_gene_6094}}
 +
{{#set: in pathway=PWY-6019}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 21:11, 21 March 2018

Reaction RXN0-5398

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 uracil[c] + 1 D-ribofuranose 5-phosphate[c] <=> 1 pseudouridine 5'-phosphate[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6019, pseudouridine degradation: PWY-6019
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links




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