Difference between revisions of "RXN-6550"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16401 RXN-16401] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** acyl...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6550 RXN-6550] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16401 RXN-16401] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6550 RXN-6550] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** polyketide_synthase
 
−
** acyl-_synthetase
 
−
** ORF
 
−
** long_chain_acyl-_synthetase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[CPD-17640]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CPD-17641]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
+
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD1F-137]][c] '''=>''' 1 [[CPD-6224]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 18-hydroxystearate[c] '''+''' 1 coenzyme A[c] '''=>''' 1 18-hydroxystearoyl-CoA[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
+
** 1 2-oxoglutarate[c] '''+''' 1 oxygen[c] '''+''' 1 gibberellin A4[c] '''=>''' 1 gibberellin A34[c] '''+''' 1 CO2[c] '''+''' 1 succinate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_13394]]
+
* Gene: [[Tiso_gene_3330]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-athaliana]]
−
*** Assignment: EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
* Gene: [[Tiso_gene_500]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_4191]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_135]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_348]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_10876]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_9394]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_7855]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_136]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6733]], sporopollenin precursors biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6733 PWY-6733]
+
* [[PWY-102]], gibberellin inactivation I (2β-hydroxylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-102 PWY-102]
−
** '''8''' reactions found over '''18''' reactions in the full pathway
+
** '''4''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[annotation]]
+
* Category: [[orthology]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-athaliana]]
−
*** Tool: [[pathwaytools]]
+
*** Tool: [[pantograph]]
−
** Source: [[annotation-experimental_annotation]]
+
** Source: [[orthology-esiliculosus]]
−
*** Tool: [[pathwaytools]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R06338 R06338]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: ec number=EC-1.14.11}}
−
{{#set: common name=acyl-_synthetase}}
+
{{#set: gene associated=Tiso_gene_3330}}
−
{{#set: common name=ORF}}
+
{{#set: in pathway=PWY-102}}
−
{{#set: common name=long_chain_acyl-_synthetase}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: ec number=EC-6.2.1.3}}
+
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
−
{{#set: gene associated=Tiso_gene_13394|Tiso_gene_500|Tiso_gene_4191|Tiso_gene_135|Tiso_gene_348|Tiso_gene_10876|Tiso_gene_9394|Tiso_gene_7855|Tiso_gene_136}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: in pathway=PWY-6733}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 21:11, 21 March 2018

Reaction RXN-6550

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-102, gibberellin inactivation I (2β-hydroxylation): PWY-102
    • 4 reactions found over 11 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-6550&oldid=46675"