Difference between revisions of "DXS-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=TTP TTP] == * smiles: ** CC1(=CN(C(=O)NC(=O)1)C2(CC(O)C(COP(=O)([O-])OP(=O)([O-])OP(=O)([O-])[O...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-deoxy-d-xylulose_5-phosphate_...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=TTP TTP] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] ==
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* smiles:
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* direction:
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** CC1(=CN(C(=O)NC(=O)1)C2(CC(O)C(COP(=O)([O-])OP(=O)([O-])OP(=O)([O-])[O-])O2))
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** dTTP
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** 1-deoxy-d-xylulose_5-phosphate_chloroplast
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* inchi key:
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* ec number:
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** InChIKey=NHVNXKFIZYSCEB-XLPZGREQSA-J
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** [http://enzyme.expasy.org/EC/2.2.1.7 EC-2.2.1.7]
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* molecular weight:
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** 478.139   
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* Synonym(s):
 
* Synonym(s):
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** thymidine triphosphate
 
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** thymidine 5'-triphosphate
 
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** TTP
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[DTTGY]]
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* With identifiers:
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* [[RXN0-5107]]
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** 1 [[PROTON]][c] '''+''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[DEOXYXYLULOSE-5P]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* [[RME255]]
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* With common name(s):
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* [[DTTUP]]
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** 1 H+[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 pyruvate[c] '''=>''' 1 1-deoxy-D-xylulose 5-phosphate[c] '''+''' 1 CO2[c]
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* [[THYMIDINE-TRIPHOSPHATASE-RXN]]
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* [[RXN-14200]]
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== Genes associated with this reaction  ==
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* [[DTNH]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) known to produce the compound ==
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* Gene: [[Tiso_gene_17311]]
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* [[ATDTDm]]
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** Source: [[annotation-in-silico_annotation]]
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* [[ATDTD]]
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*** Assignment: EC-NUMBER
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* [[DTDPKIN-RXN]]
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** Source: [[annotation-experimental_annotation]]
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== Reaction(s) of unknown directionality ==
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*** Assignment: EC-NUMBER
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* [[DTDPGLUCOSEPP-RXN]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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== Pathways  ==
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6891]], thiazole biosynthesis II (aerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6891 PWY-6891]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6892 PWY-6892]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 365-08-2
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* RHEA:
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* BIGG : dttp
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12605 12605]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=11988283 11988283]
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** [http://www.genome.jp/dbget-bin/www_bget?R05636 R05636]
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* HMDB : HMDB01342
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{{#set: direction=LEFT-TO-RIGHT}}
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* LIGAND-CPD:
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{{#set: common name=1-deoxy-d-xylulose_5-phosphate_chloroplast}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00459 C00459]
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{{#set: ec number=EC-2.2.1.7}}
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* CHEMSPIDER:
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{{#set: gene associated=Tiso_gene_17311}}
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** [http://www.chemspider.com/Chemical-Structure.10160750.html 10160750]
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{{#set: in pathway=NONMEVIPP-PWY|PWY-6891|PYRIDOXSYN-PWY|PWY-6892|PWY-7560}}
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* CHEBI:
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{{#set: reconstruction category=orthology|manual|annotation}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=37568 37568]
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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* METABOLIGHTS : MTBLC37568
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: smiles=CC1(=CN(C(=O)NC(=O)1)C2(CC(O)C(COP(=O)([O-])OP(=O)([O-])OP(=O)([O-])[O-])O2))}}
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{{#set: common name=dTTP}}
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{{#set: inchi key=InChIKey=NHVNXKFIZYSCEB-XLPZGREQSA-J}}
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{{#set: molecular weight=478.139    }}
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{{#set: common name=thymidine triphosphate|thymidine 5'-triphosphate|TTP}}
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{{#set: consumed by=DTTGY|RXN0-5107|RME255|DTTUP|THYMIDINE-TRIPHOSPHATASE-RXN|RXN-14200|DTNH}}
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{{#set: produced by=ATDTDm|ATDTD|DTDPKIN-RXN}}
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{{#set: reversible reaction associated=DTDPGLUCOSEPP-RXN}}
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Latest revision as of 21:11, 21 March 2018

Reaction DXS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 1-deoxy-d-xylulose_5-phosphate_chloroplast
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 D-glyceraldehyde 3-phosphate[c] + 1 pyruvate[c] => 1 1-deoxy-D-xylulose 5-phosphate[c] + 1 CO2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6891, thiazole biosynthesis II (aerobic bacteria): PWY-6891
    • 2 reactions found over 7 reactions in the full pathway
  • PYRIDOXSYN-PWY, pyridoxal 5'-phosphate biosynthesis I: PYRIDOXSYN-PWY
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-6892, thiazole biosynthesis I (facultative anaerobic bacteria): PWY-6892
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II: PWY-7560
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DXS-RXN&oldid=46686"