Difference between revisions of "DXS-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ADENOSINE_DIPHOSPHATE_RIBOSE ADENOSINE_DIPHOSPHATE_RIBOSE] == * smiles: ** C(C3(C(C(C(N2(C1(=C(...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-deoxy-d-xylulose_5-phosphate_...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ADENOSINE_DIPHOSPHATE_RIBOSE ADENOSINE_DIPHOSPHATE_RIBOSE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] ==
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* smiles:
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* direction:
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** C(C3(C(C(C(N2(C1(=C(C(=NC=N1)N)N=C2)))O3)O)O))OP(OP([O-])(=O)OCC4(C(O)C(O)C(O4)O))(=O)[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=SRNWOUGRCWSEMX-TYASJMOZSA-L
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* common name:
 
* common name:
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** ADP-D-ribose
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** 1-deoxy-d-xylulose_5-phosphate_chloroplast
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* molecular weight:
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* ec number:
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** 557.303   
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** [http://enzyme.expasy.org/EC/2.2.1.7 EC-2.2.1.7]
 
* Synonym(s):
 
* Synonym(s):
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** adenosine diphosphate D-ribose
 
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** adenosine 5'-(5-deoxy-D-ribofuranos-5-yl diphosphate)
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[ARDP]]
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* With identifiers:
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* [[RXN0-1441]]
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** 1 [[PROTON]][c] '''+''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[DEOXYXYLULOSE-5P]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[3.2.1.143-RXN]]
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** 1 H+[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 pyruvate[c] '''=>''' 1 1-deoxy-D-xylulose 5-phosphate[c] '''+''' 1 CO2[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_17311]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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== Pathways  ==
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6891]], thiazole biosynthesis II (aerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6891 PWY-6891]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6892 PWY-6892]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 20762-30-5
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* RHEA:
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* METABOLIGHTS : MTBLC57967
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12605 12605]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=49791958 49791958]
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** [http://www.genome.jp/dbget-bin/www_bget?R05636 R05636]
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* HMDB : HMDB01178
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{{#set: direction=LEFT-TO-RIGHT}}
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* LIGAND-CPD:
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{{#set: common name=1-deoxy-d-xylulose_5-phosphate_chloroplast}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00301 C00301]
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{{#set: ec number=EC-2.2.1.7}}
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* CHEBI:
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{{#set: gene associated=Tiso_gene_17311}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57967 57967]
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{{#set: in pathway=NONMEVIPP-PWY|PWY-6891|PYRIDOXSYN-PWY|PWY-6892|PWY-7560}}
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* BIGG : adprib
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: smiles=C(C3(C(C(C(N2(C1(=C(C(=NC=N1)N)N=C2)))O3)O)O))OP(OP([O-])(=O)OCC4(C(O)C(O)C(O4)O))(=O)[O-]}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: inchi key=InChIKey=SRNWOUGRCWSEMX-TYASJMOZSA-L}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: common name=ADP-D-ribose}}
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{{#set: molecular weight=557.303    }}
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{{#set: common name=adenosine diphosphate D-ribose|adenosine 5'-(5-deoxy-D-ribofuranos-5-yl diphosphate)}}
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{{#set: consumed by=ARDP|RXN0-1441}}
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{{#set: produced by=3.2.1.143-RXN}}
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Latest revision as of 21:11, 21 March 2018

Reaction DXS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 1-deoxy-d-xylulose_5-phosphate_chloroplast
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 D-glyceraldehyde 3-phosphate[c] + 1 pyruvate[c] => 1 1-deoxy-D-xylulose 5-phosphate[c] + 1 CO2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6891, thiazole biosynthesis II (aerobic bacteria): PWY-6891
    • 2 reactions found over 7 reactions in the full pathway
  • PYRIDOXSYN-PWY, pyridoxal 5'-phosphate biosynthesis I: PYRIDOXSYN-PWY
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-6892, thiazole biosynthesis I (facultative anaerobic bacteria): PWY-6892
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II: PWY-7560
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DXS-RXN&oldid=46686"