Difference between revisions of "Tiso gene 3392"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SULFOCYS-RXN SULFOCYS-RXN] == * direction: ** REVERSIBLE * common name: ** cog0031:_cysteine_syntha...")
(Created page with "Category:Gene == Gene Tiso_gene_3392 == * right end position: ** 16725 * transcription direction: ** POSITIVE * left end position: ** 14616 * centisome position: ** 86.746...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SULFOCYS-RXN SULFOCYS-RXN] ==
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== Gene Tiso_gene_3392 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 16725
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* common name:
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* transcription direction:
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** cog0031:_cysteine_synthase
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** POSITIVE
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** cysteine_synthase
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* left end position:
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** cysteine
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** 14616
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.5.1.47 EC-2.5.1.47]
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** 86.746994   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.2.1.47-RXN]]
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** 1 [[S2O3]][c] '''+''' 1 [[ACETYLSERINE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[ACET]][c] '''+''' 1 [[SULFO-CYSTEINE]][c]
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** Source: [[orthology-athaliana]]
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* With common name(s):
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* Reaction: [[ALPHAGALACTOSID-RXN]]
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** 1 thiosulfate[c] '''+''' 1 O-acetyl-L-serine[c] '''<=>''' 1 H+[c] '''+''' 1 acetate[c] '''+''' 1 S-sulfo-L-cysteine[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_2283]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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* Gene: [[Tiso_gene_17043]]
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** Source: [[orthology-athaliana]]
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* Reaction: [[RXN-11501]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6110]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-11502]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_3732]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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−
** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_7852]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-12088]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_819]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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* Reaction: [[RXN-17754]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_12184]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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* Reaction: [[RXN-17830]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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−
*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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−
*** Tool: [[pantograph]]
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* Category: [[annotation]]
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−
** Source: [[annotation-experimental_annotation]]
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−
*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-6527]]
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* [[PWY0-1301]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=16725}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30891 30891]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=14616}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03132 R03132]
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{{#set: centisome position=86.746994    }}
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{{#set: direction=REVERSIBLE}}
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{{#set: reaction associated=3.2.1.47-RXN|ALPHAGALACTOSID-RXN|RXN-11501|RXN-11502|RXN-12088|RXN-17754|RXN-17830}}
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{{#set: common name=cog0031:_cysteine_synthase}}
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{{#set: pathway associated=PWY-6527|PWY0-1301}}
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{{#set: common name=cysteine_synthase}}
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{{#set: common name=cysteine}}
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{{#set: ec number=EC-2.5.1.47}}
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{{#set: gene associated=Tiso_gene_2283|Tiso_gene_17043|Tiso_gene_6110|Tiso_gene_3732|Tiso_gene_7852|Tiso_gene_819|Tiso_gene_12184}}
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−
{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
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−
{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 21:12, 21 March 2018

Gene Tiso_gene_3392

  • right end position:
    • 16725
  • transcription direction:
    • POSITIVE
  • left end position:
    • 14616
  • centisome position:
    • 86.746994
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3392&oldid=46762"