Difference between revisions of "1.3.99.23-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_3392 == * left end position: ** 14616 * transcription direction: ** POSITIVE * right end position: ** 16725 * centisome position: ** 86.746...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.99.23-RXN 1.3.99.23-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** carotenoid_isomeras...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Gene]]
+
[[Category:Reaction]]
== Gene Tiso_gene_3392 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.99.23-RXN 1.3.99.23-RXN] ==
* left end position:
+
* direction:
** 14616
+
** LEFT-TO-RIGHT
* transcription direction:
+
* common name:
** POSITIVE
+
** carotenoid_isomerase
* right end position:
+
** carotene_isomerase
** 16725
+
** fad_nad_-binding_oxidoreductase_domain-containing_protein
* centisome position:
+
** carotenoid_isomerase-like_protein
** 86.746994   
+
** all-trans-_-dihydroretinol_saturase
 +
** ORF
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.3.99.23 EC-1.3.99.23]
 
* Synonym(s):
 
* Synonym(s):
  
== Reactions associated ==
+
== Reaction Formula ==
* [[3.2.1.47-RXN]]
+
* With identifiers:
** [[pantograph]]-[[athaliana]]
+
** 1 [[CPD-13524]][c] '''+''' 1 [[Donor-H2]][c] '''=>''' 1 [[CPD-7247]][c] '''+''' 1 [[Acceptor]][c]
* [[ALPHAGALACTOSID-RXN]]
+
* With common name(s):
** in-silico_annotation
+
** 1 all-trans-retinol[c] '''+''' 1 a reduced electron acceptor[c] '''=>''' 1 all-trans-13,14-dihydroretinol[c] '''+''' 1 an oxidized electron acceptor[c]
***automated-name-match
+
 
** [[pantograph]]-[[athaliana]]
+
== Genes associated with this reaction  ==
* [[RXN-11501]]
+
Genes have been associated with this reaction based on different elements listed below.
** in-silico_annotation
+
* Gene: [[Tiso_gene_3092]]
***automated-name-match
+
** Source: [[annotation-in-silico_annotation]]
** [[pantograph]]-[[athaliana]]
+
*** Assignment: EC-NUMBER
* [[RXN-11502]]
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* Gene: [[Tiso_gene_13367]]
** in-silico_annotation
+
** Source: [[annotation-in-silico_annotation]]
***automated-name-match
+
*** Assignment: EC-NUMBER
** [[pantograph]]-[[athaliana]]
+
* Gene: [[Tiso_gene_9534]]
* [[RXN-12088]]
+
** Source: [[annotation-in-silico_annotation]]
** in-silico_annotation
+
*** Assignment: EC-NUMBER
***automated-name-match
+
* Gene: [[Tiso_gene_16795]]
* [[RXN-17754]]
+
** Source: [[annotation-in-silico_annotation]]
** in-silico_annotation
+
*** Assignment: EC-NUMBER
***automated-name-match
+
* Gene: [[Tiso_gene_917]]
* [[RXN-17830]]
+
** Source: [[annotation-in-silico_annotation]]
** in-silico_annotation
+
*** Assignment: EC-NUMBER
***automated-name-match
+
* Gene: [[Tiso_gene_13369]]
== Pathways associated ==
+
** Source: [[annotation-in-silico_annotation]]
* [[PWY-6527]]
+
*** Assignment: EC-NUMBER
* [[PWY0-1301]]
+
* Gene: [[Tiso_gene_16794]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways ==
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
{{#set: left end position=14616}}
+
* RHEA:
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19193 19193]
{{#set: right end position=16725}}
+
* LIGAND-RXN:
{{#set: centisome position=86.746994    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R07163 R07163]
{{#set: reaction associated=3.2.1.47-RXN|ALPHAGALACTOSID-RXN|RXN-11501|RXN-11502|RXN-12088|RXN-17754|RXN-17830}}
+
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: pathway associated=PWY-6527|PWY0-1301}}
+
{{#set: common name=carotenoid_isomerase}}
 +
{{#set: common name=carotene_isomerase}}
 +
{{#set: common name=fad_nad_-binding_oxidoreductase_domain-containing_protein}}
 +
{{#set: common name=carotenoid_isomerase-like_protein}}
 +
{{#set: common name=all-trans-_-dihydroretinol_saturase}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-1.3.99.23}}
 +
{{#set: gene associated=Tiso_gene_3092|Tiso_gene_13367|Tiso_gene_9534|Tiso_gene_16795|Tiso_gene_917|Tiso_gene_13369|Tiso_gene_16794}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 21:12, 21 March 2018

Reaction 1.3.99.23-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • carotenoid_isomerase
    • carotene_isomerase
    • fad_nad_-binding_oxidoreductase_domain-containing_protein
    • carotenoid_isomerase-like_protein
    • all-trans-_-dihydroretinol_saturase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 all-trans-retinol[c] + 1 a reduced electron acceptor[c] => 1 all-trans-13,14-dihydroretinol[c] + 1 an oxidized electron acceptor[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links