Difference between revisions of "GDPPYPHOSKIN-RXN"
From metabolic_network
(Created page with "Category:Gene == Gene Tiso_gene_9234 == * right end position: ** 7990 * transcription direction: ** POSITIVE * left end position: ** 1233 * centisome position: ** 12.98851...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPPYPHOSKIN-RXN GDPPYPHOSKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ppgpp_synthet...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPPYPHOSKIN-RXN GDPPYPHOSKIN-RXN] == |
| − | * | + | * direction: |
| − | ** | + | ** LEFT-TO-RIGHT |
| − | * | + | * common name: |
| − | ** | + | ** ppgpp_synthetase |
| − | * | + | ** ca2+-activated_spot-like_protein |
| − | ** | + | ** gtp_pyrophosphokinase |
| − | * | + | * ec number: |
| − | ** | + | ** [http://enzyme.expasy.org/EC/2.7.6.5 EC-2.7.6.5] |
* Synonym(s): | * Synonym(s): | ||
| − | == | + | == Reaction Formula == |
| − | * | + | * With identifiers: |
| − | + | ** 1 [[GDP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[GUANOSINE-5DP-3DP]][c] '''+''' 1 [[AMP]][c] | |
| − | *** | + | * With common name(s): |
| − | * | + | ** 1 GDP[c] '''+''' 1 ATP[c] '''=>''' 1 ppGpp[c] '''+''' 1 AMP[c] |
| + | |||
| + | == Genes associated with this reaction == | ||
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[Tiso_gene_16305]] | ||
** Source: [[annotation-in-silico_annotation]] | ** Source: [[annotation-in-silico_annotation]] | ||
| − | *** Assignment: | + | *** Assignment: AUTOMATED-NAME-MATCH |
| − | * | + | ** Source: [[orthology-esiliculosus]] |
| + | * Gene: [[Tiso_gene_7349]] | ||
** Source: [[annotation-in-silico_annotation]] | ** Source: [[annotation-in-silico_annotation]] | ||
| − | *** Assignment: | + | *** Assignment: AUTOMATED-NAME-MATCH |
| − | * | + | * Gene: [[Tiso_gene_6799]] |
** Source: [[annotation-in-silico_annotation]] | ** Source: [[annotation-in-silico_annotation]] | ||
| − | *** Assignment: | + | *** Assignment: EC-NUMBER |
| − | * | + | == Pathways == |
| + | * [[PPGPPMET-PWY]], ppGpp biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY] | ||
| + | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | * Category: [[annotation]] | ||
** Source: [[annotation-in-silico_annotation]] | ** Source: [[annotation-in-silico_annotation]] | ||
| − | *** | + | *** Tool: [[pathwaytools]] |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
== External links == | == External links == | ||
| − | {{#set: | + | * RHEA: |
| − | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28098 28098] |
| − | {{#set: | + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | {{#set: | + | {{#set: common name=ppgpp_synthetase}} |
| − | {{#set: | + | {{#set: common name=ca2+-activated_spot-like_protein}} |
| − | {{#set: pathway | + | {{#set: common name=gtp_pyrophosphokinase}} |
| + | {{#set: ec number=EC-2.7.6.5}} | ||
| + | {{#set: gene associated=Tiso_gene_16305|Tiso_gene_7349|Tiso_gene_6799}} | ||
| + | {{#set: in pathway=PPGPPMET-PWY}} | ||
| + | {{#set: reconstruction category=orthology|annotation}} | ||
| + | {{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 21:12, 21 March 2018
Contents
Reaction GDPPYPHOSKIN-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- ppgpp_synthetase
- ca2+-activated_spot-like_protein
- gtp_pyrophosphokinase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 GDP[c] + 1 ATP[c] => 1 GUANOSINE-5DP-3DP[c] + 1 AMP[c]
- With common name(s):
- 1 GDP[c] + 1 ATP[c] => 1 ppGpp[c] + 1 AMP[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_16305
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_7349
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_6799
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
Pathways
- PPGPPMET-PWY, ppGpp biosynthesis: PPGPPMET-PWY
- 5 reactions found over 6 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-esiliculosus
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
- RHEA:
