Difference between revisions of "RXN-8032"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11598 RXN-11598] == * direction: ** LEFT-TO-RIGHT * common name: ** ribosomal_rnasmallsubunitme...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8032 RXN-8032] == * direction: ** REVERSIBLE * common name: ** 3-ketopimelyl-CoA thiolase * ec...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11598 RXN-11598] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8032 RXN-8032] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** ribosomal_rnasmallsubunitmethyltransferasee
+
** 3-ketopimelyl-CoA thiolase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.193 EC-2.1.1.193]
+
** [http://enzyme.expasy.org/EC/2.3.1 EC-2.3.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[16S-rRNA-uracil1498]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[16S-rRNA-N3-methyluracil1498]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[CO-A]][c] '''+''' 1 [[3-OXOPIMELOYL-COA]][c] '''<=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[GLUTARYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 S-adenosyl-L-methionine[c] '''+''' 1 a uracil1498 in 16S rRNA[c] '''=>''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 an N3-methyluracil1498 in 16S rRNA[c] '''+''' 1 H+[c]
+
** 1 coenzyme A[c] '''+''' 1 3-oxopimeloyl-CoA[c] '''<=>''' 1 acetyl-CoA[c] '''+''' 1 glutaryl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17244]]
+
* Gene: [[Tiso_gene_7195]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***AUTOMATED-NAME-MATCH
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** Source: [[orthology-esiliculosus]]
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[CENTBENZCOA-PWY]], benzoyl-CoA degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=CENTBENZCOA-PWY CENTBENZCOA-PWY]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401]
 +
** '''5''' reactions found over '''17''' reactions in the full pathway
 +
* [[P321-PWY]], benzoyl-CoA degradation III (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P321-PWY P321-PWY]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* LIGAND-RXN:
−
{{#set: common name=ribosomal_rnasmallsubunitmethyltransferasee}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R05586 R05586]
−
{{#set: ec number=EC-2.1.1.193}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: gene associated=Tiso_gene_17244}}
+
{{#set: common name=3-ketopimelyl-CoA thiolase}}
−
{{#set: in pathway=}}
+
{{#set: ec number=EC-2.3.1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: gene associated=Tiso_gene_7195}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: in pathway=CENTBENZCOA-PWY|PWY-7401|P321-PWY}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 21:13, 21 March 2018

Reaction RXN-8032

  • direction:
    • REVERSIBLE
  • common name:
    • 3-ketopimelyl-CoA thiolase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • CENTBENZCOA-PWY, benzoyl-CoA degradation II (anaerobic): CENTBENZCOA-PWY
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-7401, crotonate fermentation (to acetate and cyclohexane carboxylate): PWY-7401
    • 5 reactions found over 17 reactions in the full pathway
  • P321-PWY, benzoyl-CoA degradation III (anaerobic): P321-PWY
    • 1 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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