Difference between revisions of "RXN-12861"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERTRANSAM-RXN PSERTRANSAM-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** phosphoseri...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12861 RXN-12861] == * direction: ** LEFT-TO-RIGHT * common name: ** dehydroascorbate hydrolase...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERTRANSAM-RXN PSERTRANSAM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12861 RXN-12861] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ORF
+
** dehydroascorbate hydrolase
−
** phosphoserine_aminotransferase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.6.1.52 EC-2.6.1.52]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[3-P-SERINE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[3-P-HYDROXYPYRUVATE]][c]
+
** 1 [[CPD-13907]][c] '''=>''' 1 [[CPD-334]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3-phospho-L-serine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 3-phospho-hydroxypyruvate[c]
+
** 1 dehydroascorbate (bicyclic form)[c] '''=>''' 1 2,3-dioxo-L-gulonate[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_17123]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_15686]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
+
* [[PWY-6959]], L-ascorbate degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6959 PWY-6959]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6961]], L-ascorbate degradation II (bacterial, aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6961 PWY-6961]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14329 14329]
+
{{#set: common name=dehydroascorbate hydrolase}}
−
* LIGAND-RXN:
+
{{#set: in pathway=PWY-6959|PWY-6961}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04173 R04173]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P10658 P10658]
+
−
** [http://www.uniprot.org/uniprot/P23721 P23721]
+
−
** [http://www.uniprot.org/uniprot/Q9PIH3 Q9PIH3]
+
−
** [http://www.uniprot.org/uniprot/Q9CHW5 Q9CHW5]
+
−
** [http://www.uniprot.org/uniprot/P44336 P44336]
+
−
** [http://www.uniprot.org/uniprot/O34370 O34370]
+
−
** [http://www.uniprot.org/uniprot/P62676 P62676]
+
−
** [http://www.uniprot.org/uniprot/P33330 P33330]
+
−
** [http://www.uniprot.org/uniprot/P19689 P19689]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: common name=phosphoserine_aminotransferase}}
+
−
{{#set: ec number=EC-2.6.1.52}}
+
−
{{#set: gene associated=Tiso_gene_17123|Tiso_gene_15686}}
+
−
{{#set: in pathway=SERSYN-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 20:13, 21 March 2018

Reaction RXN-12861

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • dehydroascorbate hydrolase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 dehydroascorbate (bicyclic form)[c] => 1 2,3-dioxo-L-gulonate[c] + 1 H+[c]

Genes associated with this reaction

Pathways

  • PWY-6959, L-ascorbate degradation V: PWY-6959
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6961, L-ascorbate degradation II (bacterial, aerobic): PWY-6961
    • 3 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12861&oldid=46958"