Difference between revisions of "PSERTRANSAM-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=URIDINEKIN-RXN URIDINEKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** uridine_kinase *...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERTRANSAM-RXN PSERTRANSAM-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** phosphoseri...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=URIDINEKIN-RXN URIDINEKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERTRANSAM-RXN PSERTRANSAM-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** uridine_kinase
+
** ORF
 +
** phosphoserine_aminotransferase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.48 EC-2.7.1.48]
+
** [http://enzyme.expasy.org/EC/2.6.1.52 EC-2.6.1.52]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[URIDINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[UMP]][c]
+
** 1 [[3-P-SERINE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[3-P-HYDROXYPYRUVATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 uridine[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 UMP[c]
+
** 1 3-phospho-L-serine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 3-phospho-hydroxypyruvate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14474]]
+
* Gene: [[Tiso_gene_17123]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15686]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7193]], pyrimidine ribonucleosides salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7193 PWY-7193]
+
* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16826 16826]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14329 14329]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00964 R00964]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04173 R04173]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P0A8F4 P0A8F4]
+
** [http://www.uniprot.org/uniprot/P10658 P10658]
−
** [http://www.uniprot.org/uniprot/P47622 P47622]
+
** [http://www.uniprot.org/uniprot/P23721 P23721]
−
** [http://www.uniprot.org/uniprot/Q9CF21 Q9CF21]
+
** [http://www.uniprot.org/uniprot/Q9PIH3 Q9PIH3]
−
** [http://www.uniprot.org/uniprot/P44533 P44533]
+
** [http://www.uniprot.org/uniprot/Q9CHW5 Q9CHW5]
−
** [http://www.uniprot.org/uniprot/P27515 P27515]
+
** [http://www.uniprot.org/uniprot/P44336 P44336]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/O34370 O34370]
−
{{#set: common name=uridine_kinase}}
+
** [http://www.uniprot.org/uniprot/P62676 P62676]
−
{{#set: ec number=EC-2.7.1.48}}
+
** [http://www.uniprot.org/uniprot/P33330 P33330]
−
{{#set: gene associated=Tiso_gene_14474}}
+
** [http://www.uniprot.org/uniprot/P19689 P19689]
−
{{#set: in pathway=PWY-7193}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: common name=ORF}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: common name=phosphoserine_aminotransferase}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: ec number=EC-2.6.1.52}}
 +
{{#set: gene associated=Tiso_gene_17123|Tiso_gene_15686}}
 +
{{#set: in pathway=SERSYN-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:13, 21 March 2018

Reaction PSERTRANSAM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
    • phosphoserine_aminotransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • SERSYN-PWY, L-serine biosynthesis: SERSYN-PWY
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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