Difference between revisions of "AGMATIN-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD3DJ-82 CPD3DJ-82] == * common name: ** a dihydroceramide * Synonym(s): ** a plant ceramide (...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATIN-RXN AGMATIN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD3DJ-82 CPD3DJ-82] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATIN-RXN AGMATIN-RXN] ==
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* common name:
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* direction:
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** a dihydroceramide
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** LEFT-TO-RIGHT
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* ec number:
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** [http://enzyme.expasy.org/EC/3.5.3.11 EC-3.5.3.11]
 
* Synonym(s):
 
* Synonym(s):
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** a plant ceramide (I)
 
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** an N-acylsphinganine
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-16332]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[WATER]][c] '''+''' 1 [[AGMATHINE]][c] '''=>''' 1 [[PUTRESCINE]][c] '''+''' 1 [[UREA]][c]
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* [[RXN3DJ-118]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 H2O[c] '''+''' 1 agmatine[c] '''=>''' 1 putrescine[c] '''+''' 1 urea[c]
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* [[RXN-13733]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_4415]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-6305]], putrescine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6305 PWY-6305]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-823 PWY0-823]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-40]], putrescine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-40 PWY-40]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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{{#set: common name=a dihydroceramide}}
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* RHEA:
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{{#set: common name=a plant ceramide (I)|an N-acylsphinganine}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13929 13929]
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{{#set: consumed by=RXN-16332}}
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* LIGAND-RXN:
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{{#set: produced by=RXN3DJ-118}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01157 R01157]
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{{#set: reversible reaction associated=RXN-13733}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P60654 P60654]
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** [http://www.uniprot.org/uniprot/P60653 P60653]
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** [http://www.uniprot.org/uniprot/P60651 P60651]
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** [http://www.uniprot.org/uniprot/Q57757 Q57757]
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** [http://www.uniprot.org/uniprot/P73270 P73270]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-3.5.3.11}}
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{{#set: gene associated=Tiso_gene_4415}}
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{{#set: in pathway=PWY-6305|PWY0-823|PWY-40}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:13, 21 March 2018

Reaction AGMATIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 agmatine[c] => 1 putrescine[c] + 1 urea[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6305, putrescine biosynthesis IV: PWY-6305
    • 3 reactions found over 4 reactions in the full pathway
  • PWY0-823, L-arginine degradation III (arginine decarboxylase/agmatinase pathway): PWY0-823
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-40, putrescine biosynthesis I: PWY-40
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=AGMATIN-RXN&oldid=47000"