Difference between revisions of "3PGAREARR-RXN"
From metabolic_network
(Created page with "Category:Gene == Gene Tiso_gene_1537 == * left end position: ** 149 * transcription direction: ** POSITIVE * right end position: ** 1729 * centisome position: ** 0.6363442...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3PGAREARR-RXN 3PGAREARR-RXN] == * direction: ** REVERSIBLE * common name: ** phosphoglycerate_mutas...") |
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− | [[Category: | + | [[Category:Reaction]] |
− | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3PGAREARR-RXN 3PGAREARR-RXN] == |
− | * | + | * direction: |
− | ** | + | ** REVERSIBLE |
− | * | + | * common name: |
− | ** | + | ** phosphoglycerate_mutase |
− | * | + | ** bisphosphoglycerate-dependent_phosphoglycerate_mutase |
− | ** | + | ** ORF |
− | * | + | ** plastid_phosphoglycerate_mutase_protein |
− | ** | + | * ec number: |
+ | ** [http://enzyme.expasy.org/EC/5.4.2.12 EC-5.4.2.12] | ||
* Synonym(s): | * Synonym(s): | ||
− | == | + | == Reaction Formula == |
− | * [[ | + | * With identifiers: |
− | ** in-silico_annotation | + | ** 1 [[2-PG]][c] '''<=>''' 1 [[G3P]][c] |
− | *** | + | * With common name(s): |
− | ** [[ | + | ** 1 2-phospho-D-glycerate[c] '''<=>''' 1 3-phospho-D-glycerate[c] |
− | * [[ | + | |
− | ** in-silico_annotation | + | == Genes associated with this reaction == |
− | *** | + | Genes have been associated with this reaction based on different elements listed below. |
− | ** [[ | + | * Gene: [[Tiso_gene_15048]] |
− | * [[ | + | ** Source: [[annotation-experimental_annotation]] |
− | ** in-silico_annotation | + | *** Assignment: EC-NUMBER |
− | *** | + | ** Source: [[orthology-esiliculosus]] |
− | ** [[ | + | ** Source: [[orthology-creinhardtii]] |
− | * [[ | + | ** Source: [[orthology-creinhardtii]] |
− | ** | + | ** Source: [[orthology-creinhardtii]] |
− | *** | + | * Gene: [[Tiso_gene_7201]] |
− | ** [[ | + | ** Source: [[annotation-in-silico_annotation]] |
− | * [[ | + | *** Assignment: EC-NUMBER |
− | ** in-silico_annotation | + | * Gene: [[Tiso_gene_9922]] |
− | *** | + | ** Source: [[annotation-in-silico_annotation]] |
− | ** [[ | + | *** Assignment: EC-NUMBER |
− | * [[ | + | * Gene: [[Tiso_gene_2841]] |
− | ** | + | ** Source: [[annotation-in-silico_annotation]] |
− | *** | + | *** Assignment: EC-NUMBER |
− | ** [[ | + | * Gene: [[Tiso_gene_14530]] |
− | * [[ | + | ** Source: [[annotation-in-silico_annotation]] |
− | ** in-silico_annotation | + | *** Assignment: EC-NUMBER |
− | *** | + | * Gene: [[Tiso_gene_16754]] |
− | ** [[ | + | ** Source: [[annotation-in-silico_annotation]] |
− | * [[ | + | *** Assignment: EC-NUMBER |
− | ** in- | + | ** Source: [[orthology-creinhardtii]] |
− | *** | + | ** Source: [[orthology-creinhardtii]] |
− | ** [[ | + | ** Source: [[orthology-creinhardtii]] |
− | == | + | * Gene: [[Tiso_gene_2365]] |
− | * [[PWY- | + | ** Source: [[annotation-in-silico_annotation]] |
− | * [[PWY- | + | *** Assignment: EC-NUMBER |
+ | * Gene: [[Tiso_gene_16271]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[orthology-synechocystis]] | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | * Gene: [[Tiso_gene_5468]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | * Gene: [[Tiso_gene_20311]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | * Gene: [[Tiso_gene_14664]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_15391]] | ||
+ | ** Source: [[orthology-athaliana]] | ||
+ | ** Source: [[orthology-athaliana]] | ||
+ | ** Source: [[orthology-synechocystis]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | * Gene: [[Tiso_gene_14212]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | * Gene: [[Tiso_gene_10516]] | ||
+ | ** Source: [[orthology-athaliana]] | ||
+ | ** Source: [[orthology-athaliana]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | * Gene: [[Tiso_gene_9923]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_2667]] | ||
+ | ** Source: [[orthology-synechocystis]] | ||
+ | == Pathways == | ||
+ | * [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042] | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY] | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221] | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY] | ||
+ | ** '''13''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS] | ||
+ | ** '''12''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901] | ||
+ | ** '''8''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218] | ||
+ | ** '''7''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] | ||
+ | ** '''11''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886] | ||
+ | ** '''8''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723] | ||
+ | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] | ||
+ | ** '''8''' reactions found over '''14''' reactions in the full pathway | ||
+ | * [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484] | ||
+ | ** '''11''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124] | ||
+ | ** '''7''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003] | ||
+ | ** '''8''' reactions found over '''10''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * Category: [[orthology]] | ||
+ | ** Source: [[orthology-athaliana]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-synechocystis]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | * Category: [[manual]] | ||
+ | ** Source: [[manual-primary_network]] | ||
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
− | {{#set: | + | * RHEA: |
− | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15901 15901] |
− | {{#set: | + | * LIGAND-RXN: |
− | {{#set: | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01518 R01518] |
− | {{#set: | + | * UNIPROT: |
− | {{#set: | + | ** [http://www.uniprot.org/uniprot/P30792 P30792] |
+ | ** [http://www.uniprot.org/uniprot/P52832 P52832] | ||
+ | ** [http://www.uniprot.org/uniprot/P44865 P44865] | ||
+ | ** [http://www.uniprot.org/uniprot/P30798 P30798] | ||
+ | ** [http://www.uniprot.org/uniprot/P62707 P62707] | ||
+ | ** [http://www.uniprot.org/uniprot/P39773 P39773] | ||
+ | ** [http://www.uniprot.org/uniprot/P47669 P47669] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CEU3 Q9CEU3] | ||
+ | ** [http://www.uniprot.org/uniprot/P56196 P56196] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTF2 Q9JTF2] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PI71 Q9PI71] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CIM0 Q9CIM0] | ||
+ | ** [http://www.uniprot.org/uniprot/P00950 P00950] | ||
+ | ** [http://www.uniprot.org/uniprot/P18669 P18669] | ||
+ | ** [http://www.uniprot.org/uniprot/P15259 P15259] | ||
+ | ** [http://www.uniprot.org/uniprot/P16290 P16290] | ||
+ | ** [http://www.uniprot.org/uniprot/P35167 P35167] | ||
+ | ** [http://www.uniprot.org/uniprot/P33158 P33158] | ||
+ | ** [http://www.uniprot.org/uniprot/Q06464 Q06464] | ||
+ | ** [http://www.uniprot.org/uniprot/P36623 P36623] | ||
+ | ** [http://www.uniprot.org/uniprot/P35494 P35494] | ||
+ | ** [http://www.uniprot.org/uniprot/P37689 P37689] | ||
+ | ** [http://www.uniprot.org/uniprot/P35493 P35493] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9VAN7 Q9VAN7] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42908 Q42908] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12326 Q12326] | ||
+ | ** [http://www.uniprot.org/uniprot/P53531 P53531] | ||
+ | ** [http://www.uniprot.org/uniprot/P51379 P51379] | ||
+ | ** [http://www.uniprot.org/uniprot/P75167 P75167] | ||
+ | ** [http://www.uniprot.org/uniprot/P72649 P72649] | ||
+ | ** [http://www.uniprot.org/uniprot/P74507 P74507] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49006 Q49006] | ||
+ | ** [http://www.uniprot.org/uniprot/O24246 O24246] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X519 Q9X519] | ||
+ | {{#set: direction=REVERSIBLE}} | ||
+ | {{#set: common name=phosphoglycerate_mutase}} | ||
+ | {{#set: common name=bisphosphoglycerate-dependent_phosphoglycerate_mutase}} | ||
+ | {{#set: common name=ORF}} | ||
+ | {{#set: common name=plastid_phosphoglycerate_mutase_protein}} | ||
+ | {{#set: ec number=EC-5.4.2.12}} | ||
+ | {{#set: gene associated=Tiso_gene_15048|Tiso_gene_7201|Tiso_gene_9922|Tiso_gene_2841|Tiso_gene_14530|Tiso_gene_16754|Tiso_gene_2365|Tiso_gene_16271|Tiso_gene_5468|Tiso_gene_20311|Tiso_gene_14664|Tiso_gene_15391|Tiso_gene_14212|Tiso_gene_10516|Tiso_gene_9923|Tiso_gene_2667}} | ||
+ | {{#set: in pathway=PWY-1042|P341-PWY|PWY-2221|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|PWY-7218|P124-PWY|PWY-6886|PWY-5723|PWY-6142|PWY-5484|PWY-7124|PWY-7003}} | ||
+ | {{#set: reconstruction category=orthology|manual|annotation}} | ||
+ | {{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 20:14, 21 March 2018
Contents
Reaction 3PGAREARR-RXN
- direction:
- REVERSIBLE
- common name:
- phosphoglycerate_mutase
- bisphosphoglycerate-dependent_phosphoglycerate_mutase
- ORF
- plastid_phosphoglycerate_mutase_protein
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 2-phospho-D-glycerate[c] <=> 1 3-phospho-D-glycerate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_15048
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: orthology-esiliculosus
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Source: annotation-experimental_annotation
- Gene: Tiso_gene_7201
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_9922
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_2841
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_14530
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_16754
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_2365
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_16271
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: orthology-synechocystis
- Source: orthology-esiliculosus
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_5468
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Gene: Tiso_gene_20311
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Gene: Tiso_gene_14664
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_15391
- Source: orthology-athaliana
- Source: orthology-athaliana
- Source: orthology-synechocystis
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Gene: Tiso_gene_14212
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Gene: Tiso_gene_10516
- Source: orthology-athaliana
- Source: orthology-athaliana
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Gene: Tiso_gene_9923
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_2667
- Source: orthology-synechocystis
Pathways
- PWY-1042, glycolysis IV (plant cytosol): PWY-1042
- 9 reactions found over 10 reactions in the full pathway
- P341-PWY, glycolysis V (Pyrococcus): P341-PWY
- 6 reactions found over 9 reactions in the full pathway
- PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative): PWY-2221
- 5 reactions found over 9 reactions in the full pathway
- GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
- 13 reactions found over 13 reactions in the full pathway
- GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
- 12 reactions found over 12 reactions in the full pathway
- PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
- 8 reactions found over 12 reactions in the full pathway
- PWY-7218, photosynthetic 3-hydroxybutanoate biosynthesis (engineered): PWY-7218
- 7 reactions found over 10 reactions in the full pathway
- P124-PWY, Bifidobacterium shunt: P124-PWY
- 11 reactions found over 15 reactions in the full pathway
- PWY-6886, 1-butanol autotrophic biosynthesis (engineered): PWY-6886
- 8 reactions found over 11 reactions in the full pathway
- PWY-5723, Rubisco shunt: PWY-5723
- 10 reactions found over 10 reactions in the full pathway
- PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
- 8 reactions found over 14 reactions in the full pathway
- PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
- 11 reactions found over 11 reactions in the full pathway
- PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
- 7 reactions found over 10 reactions in the full pathway
- PWY-7003, glycerol degradation to butanol: PWY-7003
- 8 reactions found over 10 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-athaliana
- Tool: pantograph
- Source: orthology-creinhardtii
- Tool: pantograph
- Source: orthology-synechocystis
- Tool: pantograph
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-athaliana
- Category: manual
- Source: manual-primary_network
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: