Difference between revisions of "Tiso gene 6004"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TREHALA-RXN TREHALA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** glycoside_hydrol...")
(Created page with "Category:Gene == Gene Tiso_gene_6004 == * right end position: ** 12670 * transcription direction: ** POSITIVE * left end position: ** 11397 * centisome position: ** 60.966...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TREHALA-RXN TREHALA-RXN] ==
+
== Gene Tiso_gene_6004 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 12670
−
* common name:
+
* transcription direction:
−
** ORF
+
** POSITIVE
−
** glycoside_hydrolase_family_37
+
* left end position:
−
* ec number:
+
** 11397
−
** [http://enzyme.expasy.org/EC/3.2.1.28 EC-3.2.1.28]
+
* centisome position:
 +
** 60.966087   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[METHYLENETHFDEHYDROG-NADP-RXN]]
−
** 1 [[TREHALOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLC]][c] '''+''' 1 [[ALPHA-GLUCOSE]][c]
+
−
* With common name(s):
+
−
** 1 α,α-trehalose[c] '''+''' 1 H2O[c] '''=>''' 1 β-D-glucopyranose[c] '''+''' 1 α-D-glucopyranose[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* Gene: [[Tiso_gene_7688]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_13748]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
== Pathways  ==
+
−
* [[PWY0-1182]], trehalose degradation II (trehalase): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1182 PWY0-1182]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY0-1466]], trehalose degradation VI (periplasmic): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1466 PWY0-1466]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
== Pathways associated ==
 +
* [[PWY-1722]]
 +
* [[PWY-3841]]
 +
* [[1CMET2-PWY]]
 +
* [[CODH-PWY]]
 +
* [[PWY-5497]]
 +
* [[PWY-2201]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: right end position=12670}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00010 R00010]
+
{{#set: transcription direction=POSITIVE}}
−
* UNIPROT:
+
{{#set: left end position=11397}}
−
** [http://www.uniprot.org/uniprot/P19813 P19813]
+
{{#set: centisome position=60.966087    }}
−
** [http://www.uniprot.org/uniprot/O43280 O43280]
+
{{#set: reaction associated=METHYLENETHFDEHYDROG-NADP-RXN}}
−
** [http://www.uniprot.org/uniprot/P13482 P13482]
+
{{#set: pathway associated=PWY-1722|PWY-3841|1CMET2-PWY|CODH-PWY|PWY-5497|PWY-2201}}
−
** [http://www.uniprot.org/uniprot/P32359 P32359]
+
−
** [http://www.uniprot.org/uniprot/P32358 P32358]
+
−
** [http://www.uniprot.org/uniprot/P35172 P35172]
+
−
** [http://www.uniprot.org/uniprot/P62601 P62601]
+
−
** [http://www.uniprot.org/uniprot/P32356 P32356]
+
−
** [http://www.uniprot.org/uniprot/P48016 P48016]
+
−
** [http://www.uniprot.org/uniprot/P78922 P78922]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: common name=glycoside_hydrolase_family_37}}
+
−
{{#set: ec number=EC-3.2.1.28}}
+
−
{{#set: gene associated=Tiso_gene_7688|Tiso_gene_13748}}
+
−
{{#set: in pathway=PWY0-1182|PWY0-1466}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 21:15, 21 March 2018

Gene Tiso_gene_6004

  • right end position:
    • 12670
  • transcription direction:
    • POSITIVE
  • left end position:
    • 11397
  • centisome position:
    • 60.966087
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6004&oldid=47173"