Difference between revisions of "Tiso gene 6004"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1281 RXN0-1281] == * direction: ** LEFT-TO-RIGHT * common name: ** dihydrouridine synthase **...")
 
(Created page with "Category:Gene == Gene Tiso_gene_6004 == * right end position: ** 12670 * transcription direction: ** POSITIVE * left end position: ** 11397 * centisome position: ** 60.966...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1281 RXN0-1281] ==
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== Gene Tiso_gene_6004 ==
* direction:
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* right end position:
** LEFT-TO-RIGHT
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** 12670
* common name:
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* transcription direction:
** dihydrouridine synthase
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** POSITIVE
** trna-dihydrouridine_synthase
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* left end position:
* ec number:
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** 11397
** [http://enzyme.expasy.org/EC/1.1.1 EC-1.1.1]
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* centisome position:
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** 60.966087   
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
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== Reactions associated ==
* With identifiers:
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* Reaction: [[METHYLENETHFDEHYDROG-NADP-RXN]]
** 1 [[tRNA-uridines]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[tRNA-Dihydrouridines]][c]
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** Source: [[annotation-in-silico_annotation]]
* With common name(s):
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*** Assignment: ec-number
** 1 a uridine in tRNA[c] '''+''' 1 H+[c] '''+''' 1 NADPH[c] '''=>''' 1 NADP+[c] '''+''' 1 a 5,6-dihydrouridine in tRNA[c]
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== Pathways associated ==
 
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* [[PWY-1722]]
== Genes associated with this reaction  ==
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* [[PWY-3841]]
Genes have been associated with this reaction based on different elements listed below.
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* [[1CMET2-PWY]]
* [[Tiso_gene_8241]]
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* [[CODH-PWY]]
** IN-SILICO_ANNOTATION
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* [[PWY-5497]]
***AUTOMATED-NAME-MATCH
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* [[PWY-2201]]
* [[Tiso_gene_15416]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15890]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_5731]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15286]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_8242]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_7714]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_15154]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_12147]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_4505]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_15285]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=12670}}
{{#set: common name=dihydrouridine synthase}}
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{{#set: transcription direction=POSITIVE}}
{{#set: common name=trna-dihydrouridine_synthase}}
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{{#set: left end position=11397}}
{{#set: ec number=EC-1.1.1}}
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{{#set: centisome position=60.966087    }}
{{#set: gene associated=Tiso_gene_8241|Tiso_gene_15416|Tiso_gene_15890|Tiso_gene_5731|Tiso_gene_15286|Tiso_gene_8242|Tiso_gene_7714|Tiso_gene_15154|Tiso_gene_12147|Tiso_gene_4505|Tiso_gene_15285}}
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{{#set: reaction associated=METHYLENETHFDEHYDROG-NADP-RXN}}
{{#set: in pathway=}}
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{{#set: pathway associated=PWY-1722|PWY-3841|1CMET2-PWY|CODH-PWY|PWY-5497|PWY-2201}}
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 21:15, 21 March 2018

Gene Tiso_gene_6004

  • right end position:
    • 12670
  • transcription direction:
    • POSITIVE
  • left end position:
    • 11397
  • centisome position:
    • 60.966087
  • Synonym(s):

Reactions associated

Pathways associated

External links