Difference between revisions of "RXN-12625"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_12533 == * left end position: ** 3857 * transcription direction: ** POSITIVE * right end position: ** 6912 * centisome position: ** 55.7450...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12625 RXN-12625] == * direction: ** LEFT-TO-RIGHT * common name: ** N,N'-diacetylchitobiose &be...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_12533 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12625 RXN-12625] ==
−
* left end position:
+
* direction:
−
** 3857
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** N,N'-diacetylchitobiose β-N-acetylglucosaminidase
−
* right end position:
+
** beta-hexosaminidase
−
** 6912
+
* ec number:
−
* centisome position:
+
** [http://enzyme.expasy.org/EC/3.2.1.52 EC-3.2.1.52]
−
** 55.74505   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[GDR]]
+
* With identifiers:
−
** [[pantograph]]-[[creinhardtii]]
+
** 1 [[CHITOBIOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[N-acetyl-D-glucosamine]][c]
−
* [[GDR_nadp]]
+
* With common name(s):
−
** [[pantograph]]-[[creinhardtii]]
+
** 1 N,N'-diacetylchitobiose[c] '''+''' 1 H2O[c] '''=>''' 2 N-acetyl-D-glucosamine[c]
−
* [[GDR_nadp_h]]
+
 
−
** [[pantograph]]-[[creinhardtii]]
+
== Genes associated with this reaction  ==
−
* [[GDR_nadp_m]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_1129]]
−
* [[GDRh]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: EC-NUMBER
−
* [[GDRm]]
+
** Source: [[orthology-athaliana]]
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_14122]]
−
* [[GLUTATHIONE-REDUCT-NADPH-RXN]]
+
** Source: [[annotation-in-silico_annotation]]
−
** in-silico_annotation
+
*** Assignment: EC-NUMBER
−
***ec-number
+
** Source: [[orthology-athaliana]]
−
** experimental_annotation
+
== Pathways  ==
−
***ec-number
+
* [[PWY-7822]], chitin degradation III (Serratia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7822 PWY-7822]
−
** [[pantograph]]-[[athaliana]]
+
** '''2''' reactions found over '''7''' reactions in the full pathway
−
** [[pantograph]]-[[esiliculosus]]
+
* [[PWY-6902]], chitin degradation II (Vibrio): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6902 PWY-6902]
−
== Pathways associated ==
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-4081]]
+
== Reconstruction information  ==
−
* [[GLUT-REDOX-PWY]]
+
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=3857}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30674 30674]
−
{{#set: right end position=6912}}
+
* LIGAND-RXN:
−
{{#set: centisome position=55.74505    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00022 R00022]
−
{{#set: reaction associated=GDR|GDR_nadp|GDR_nadp_h|GDR_nadp_m|GDRh|GDRm|GLUTATHIONE-REDUCT-NADPH-RXN}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: pathway associated=PWY-4081|GLUT-REDOX-PWY}}
+
{{#set: common name=N,N'-diacetylchitobiose β-N-acetylglucosaminidase}}
 +
{{#set: common name=beta-hexosaminidase}}
 +
{{#set: ec number=EC-3.2.1.52}}
 +
{{#set: gene associated=Tiso_gene_1129|Tiso_gene_14122}}
 +
{{#set: in pathway=PWY-7822|PWY-6902}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:15, 21 March 2018

Reaction RXN-12625

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • N,N'-diacetylchitobiose β-N-acetylglucosaminidase
    • beta-hexosaminidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7822, chitin degradation III (Serratia): PWY-7822
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-6902, chitin degradation II (Vibrio): PWY-6902
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12625&oldid=47224"