Difference between revisions of "Tiso gene 1154"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=QUINOPRIBOTRANS-RXN QUINOPRIBOTRANS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** endo-_-...")
(Created page with "Category:Gene == Gene Tiso_gene_1154 == * right end position: ** 8866 * transcription direction: ** POSITIVE * left end position: ** 3416 * centisome position: ** 11.79273...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=QUINOPRIBOTRANS-RXN QUINOPRIBOTRANS-RXN] ==
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== Gene Tiso_gene_1154 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 8866
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* common name:
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* transcription direction:
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** endo-_-beta-glucanase
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** POSITIVE
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** nicotinate-nucleotide_pyrophosphorylase
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* left end position:
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** phosphoglycolate_phosphatase
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** 3416
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.4.2.19 EC-2.4.2.19]
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** 11.792730   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GLUTAMATE-SYNTHASE-FERREDOXIN-RXN]]
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** 1 [[QUINOLINATE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[PRPP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c]
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** Source: [[annotation-experimental_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 quinolinate[c] '''+''' 2 H+[c] '''+''' 1 5-phospho-α-D-ribose 1-diphosphate[c] '''=>''' 1 CO2[c] '''+''' 1 diphosphate[c] '''+''' 1 β-nicotinate D-ribonucleotide[c]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[GLUTAMATE-SYNTHASE-NADH-RXN]]
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* [[Tiso_gene_141]]
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** Source: [[orthology-synechocystis]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[GLUTAMATESYN-RXN]]
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***AUTOMATED-NAME-MATCH
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** Assignment: ec-number
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** [[pantograph]]-[[synechocystis]]
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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** [[pantograph]]-[[creinhardtii]]
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* Reaction: [[GLUTAMIN-RXN]]
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* [[Tiso_gene_12892]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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* [[Tiso_gene_8723]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
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* Reaction: [[GLUTDEHYD-RXN]]
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* [[Tiso_gene_140]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***AUTOMATED-NAME-MATCH
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** Source: [[annotation-experimental_annotation]]
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== Pathways  ==
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*** Assignment: ec-number
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* [[PWY-5316]], nicotine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5316 PWY-5316]
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* Reaction: [[RXN-12878]]
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** '''2''' reactions found over '''9''' reactions in the full pathway
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** Source: [[annotation-experimental_annotation]]
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* [[PWY-5653]], NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5653 PWY-5653]
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*** Assignment: automated-name-match
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** '''3''' reactions found over '''4''' reactions in the full pathway
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** Source: [[orthology-esiliculosus]]
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* [[PYRIDNUCSYN-PWY]], NAD biosynthesis I (from aspartate): [http://metacyc.org/META/NEW-IMAGE?object=PYRIDNUCSYN-PWY PYRIDNUCSYN-PWY]
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== Pathways associated ==
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[GLUTAMINEFUM-PWY]]
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* [[PWY-7342]], superpathway of nicotine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7342 PWY-7342]
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* [[GLUTAMINDEG-PWY]]
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** '''3''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-5913]]
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== Reconstruction information  ==
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* [[PWY490-3]]
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* [[orthology]]:
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* [[GLUTSYN-PWY]]
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** [[pantograph]]:
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* [[PWY-4341]]
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*** [[creinhardtii]]
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* [[PWY-5675]]
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*** [[synechocystis]]
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* [[PWY-6549]]
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*** [[athaliana]]
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* [[PWY-6964]]
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*** [[esiliculosus]]
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* [[GLUGLNSYN-PWY]]
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* [[annotation]]:
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* [[GLUTSYNIII-PWY]]
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** [[pathwaytools]]:
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* [[CITRULBIO-PWY]]
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*** [[in-silico_annotation]]
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* [[PWY-6963]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=8866}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12733 12733]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=3416}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03348 R03348]
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{{#set: centisome position=11.792730    }}
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* UNIPROT:
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{{#set: reaction associated=GLUTAMATE-SYNTHASE-FERREDOXIN-RXN|GLUTAMATE-SYNTHASE-NADH-RXN|GLUTAMATESYN-RXN|GLUTAMIN-RXN|GLUTDEHYD-RXN|RXN-12878}}
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** [http://www.uniprot.org/uniprot/Q9JSX8 Q9JSX8]
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{{#set: pathway associated=GLUTAMINEFUM-PWY|GLUTAMINDEG-PWY|PWY-5913|PWY490-3|GLUTSYN-PWY|PWY-4341|PWY-5675|PWY-6549|PWY-6964|GLUGLNSYN-PWY|GLUTSYNIII-PWY|CITRULBIO-PWY|PWY-6963}}
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** [http://www.uniprot.org/uniprot/Q57916 Q57916]
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** [http://www.uniprot.org/uniprot/P30011 P30011]
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** [http://www.uniprot.org/uniprot/P46714 P46714]
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** [http://www.uniprot.org/uniprot/Q15274 Q15274]
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** [http://www.uniprot.org/uniprot/P77938 P77938]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=endo-_-beta-glucanase}}
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{{#set: common name=nicotinate-nucleotide_pyrophosphorylase}}
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{{#set: common name=phosphoglycolate_phosphatase}}
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{{#set: ec number=EC-2.4.2.19}}
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{{#set: gene associated=Tiso_gene_141|Tiso_gene_12892|Tiso_gene_8723|Tiso_gene_140}}
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{{#set: in pathway=PWY-5316|PWY-5653|PYRIDNUCSYN-PWY|PWY-7342}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 21:15, 21 March 2018

Gene Tiso_gene_1154

  • right end position:
    • 8866
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3416
  • centisome position:
    • 11.792730
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1154&oldid=47240"