Difference between revisions of "Tiso gene 8816"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-20 RXN1F-20] == * direction: ** LEFT-TO-RIGHT * common name: ** Magnesium chelatase, H subuni...")
(Created page with "Category:Gene == Gene Tiso_gene_8816 == * right end position: ** 9275 * transcription direction: ** POSITIVE * left end position: ** 8275 * centisome position: ** 83.93346...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-20 RXN1F-20] ==
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== Gene Tiso_gene_8816 ==
* direction:
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* right end position:
** LEFT-TO-RIGHT
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** 9275
* common name:
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* transcription direction:
** Magnesium chelatase, H subunit
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** POSITIVE
** h_subunit_of_mg_chelatase
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* left end position:
** magnesium_chelatase
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** 8275
* ec number:
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* centisome position:
** [http://enzyme.expasy.org/EC/6.6.1.1 EC-6.6.1.1]
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** 83.933464   
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
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== Reactions associated ==
* With identifiers:
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* Reaction: [[3.2.1.78-RXN]]
** 1 [[WATER]][c] '''+''' 1 [[MG+2]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 1 [[ATP]][c] '''=>''' 3 [[PROTON]][c] '''+''' 1 [[MG-PROTOPORPHYRIN]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
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* With common name(s):
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** 1 H2O[c] '''+''' 1 Mg2+[c] '''+''' 1 protoporphyrin IX[c] '''+''' 1 ATP[c] '''=>''' 3 H+[c] '''+''' 1 Mg-protoporphyrin[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_11960]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_5993]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_9870]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
 +
== Pathways associated ==
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* [[PWY-7456]]
 
== External links  ==
 
== External links  ==
* RHEA:
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{{#set: right end position=9275}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13961 13961]
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{{#set: transcription direction=POSITIVE}}
* LIGAND-RXN:
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{{#set: left end position=8275}}
** [http://www.genome.jp/dbget-bin/www_bget?R03877 R03877]
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{{#set: centisome position=83.933464    }}
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=3.2.1.78-RXN}}
{{#set: common name=Magnesium chelatase, H subunit}}
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{{#set: pathway associated=PWY-7456}}
{{#set: common name=h_subunit_of_mg_chelatase}}
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{{#set: common name=magnesium_chelatase}}
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{{#set: ec number=EC-6.6.1.1}}
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{{#set: gene associated=Tiso_gene_11960|Tiso_gene_5993|Tiso_gene_9870}}
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{{#set: in pathway=PWY-5531|CHLOROPHYLL-SYN|PWY-7159}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|manual-primary_network|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 21:15, 21 March 2018

Gene Tiso_gene_8816

  • right end position:
    • 9275
  • transcription direction:
    • POSITIVE
  • left end position:
    • 8275
  • centisome position:
    • 83.933464
  • Synonym(s):

Reactions associated

Pathways associated

External links